d26249b15576a1cf3f7a79ce49e8d302b6dd32a6 max Mon Nov 3 17:49:44 2025 -0800 small changes to variant freqs track diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra index 21be29eef13..e56976b1169 100644 --- src/hg/makeDb/trackDb/human/varFreqs.ra +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -1,66 +1,66 @@ track varFreqs -shortLabel Variant Allele Frequencies -longLabel Variant Allele Frequencies from various population- or cohort-specific Projects +shortLabel Variant Frequencies +longLabel Variant Frequencies from various population- or cohort-specific Projects group varRep type bed 12 visibility hide superTrack on track mexbb shortLabel Mexico Biobank - longLabel Mexico Biobank + longLabel Variant Frequencies: Mexico Biobank tableBrowser off parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mexbb/MXBv2.vcf.gz visibility pack type vcfTabix hapClusterEnabled true dataVersion Nov 2025 track mcps shortLabel Mexico City Prospective Study - longLabel Mexico City Prospective Study (MCPS) + longLabel Variant Frequencies: Mexico City Prospective Study (MCPS) tableBrowser off parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz visibility pack type vcfTabix dataVersion May 2023 (v1.2.0) track me shortLabel Regeneron Million Exomes - longLabel Regeneron One Million Exomes (ME) Project + longLabel Variant Frequencies: Regeneron One Million Exomes (ME) Project tableBrowser off parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz visibility pack type vcfTabix hapClusterEnabled true dataVersion 10/04/2023, v1.1.3 track topmed shortLabel NHLBI TOPMED V10 - longLabel NHLBI TOPMED V10 + longLabel Variant Frequencies: NHLBI TOPMED V10 type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/topmed/topmed10.vcf.gz dataVersion Freeze 10 visibility pack track gasp shortLabel GenomeAsia Pilot Subs - longLabel GenomeAsia Pilot Substitutions + longLabel Variant Frequencies: GenomeAsia Pilot Substitutions type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.subst.vcf.gz visibility pack #dataVersion GAsP Pilot: 1,739 individuals track gaspIndels shortLabel GenomeAsia Pilot Indels - longLabel GenomeAsia Pilot Indels + longLabel Variant Frequencies: GenomeAsia Pilot Indels type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/ga100k/All.indels.annot.cont_withmaf.vcf.gz visibility pack #dataVersion GAsP Pilot: 1,739 individuals