a7e37b9dfa1c8e2c3e135d08a8ee873a2e855d47 mspeir Mon Nov 3 16:47:06 2025 -0800 removing references to hgdownload-euro, refs #35031 diff --git src/product/installer/README.md src/product/installer/README.md index 43452c30af8..f7f30c4134d 100644 --- src/product/installer/README.md +++ src/product/installer/README.md @@ -70,38 +70,35 @@ This will result in a Genome Browser accessible on localhost that loads its data through genome-mysql.soe.ucsc.edu:3306 and hgdownload.soe.ucsc.edu:80. If your geographic location is not on the US West Coast, the performance will be too slow for normal use, though sufficient to test that the setup is functional. A special MySQL (MariaDB) server is set up in Germany for users in Europe. You can change the `/usr/local/apache/cgi-bin/hg.conf` genome-mysql.soe.ucsc.edu lines to genome-euro-mysql.soe.ucsc.edu in order to get better performance. You can then use the program to download assemblies of interest to your local Genome Browser, which will result in performance at least as fast as the UCSC site. ### Network requirements Your network firewall must allow outgoing connections to the following servers and ports: * MySQL (MariaDB) connections, used to load tracks not local to your computer: - * US server: Port 3306 on genome-mysql.soe.ucsc.edu (128.114.119.174) - * European server: Port 3306 on genome-euro-mysql.soe.ucsc.edu (129.70.40.120) + * Port 3306 on genome-mysql.soe.ucsc.edu (128.114.119.174) * Rsync, used to download track data: - * US server: TCP port 873 on hgdownload.soe.ucsc.edu (128.114.119.163) - * European server: TCP port 873 on hgdownload-euro.soe.ucsc.edu (129.70.40.99) + * TCP port 873 on hgdownload.soe.ucsc.edu (128.114.119.163) * Download HTML descriptions on the fly: - * US server: TCP port 80 on hgdownload.soe.ucsc.edu (128.114.119.163) - * European server: TCP port 80 on hgdownload-euro.soe.ucsc.edu (129.70.40.99) + * TCP port 80 on hgdownload.soe.ucsc.edu (128.114.119.163) ### Root file system too small for all data If you need to move data to another partition because the root file system is too small for all of the assembly's data, the following steps will help complete the installation. First, do a minimal installation with the browserSetup.sh script as described below, using just the "install" argument. Then make symlinks to the directory that will contain the data, e.g. if your biggest filesystem is called "/big": ``` sudo mv /var/lib/mysql /big/ sudo mv /gbdb /big/ sudo ln -s /big/mysql /var/lib/mysql sudo ln -s /big/gbdb /gbdb ```