ef238e6ab90d807a28fc144fa520b50c0d1b9801 mspeir Mon Nov 3 17:12:17 2025 -0800 changing genome-source to github references, refs #35031 diff --git src/product/installer/README.md src/product/installer/README.md index f7f30c4134d..86b9a74c409 100644 --- src/product/installer/README.md +++ src/product/installer/README.md @@ -184,37 +184,37 @@ You will also want to add a cleaning command to your crontab to remove the temporary files that are created during normal Genome Browser usage. These accumulate in `/usr/local/apache/trash` and can quickly consume significant space. A command like this should be added to your crontab file: sudo bash browserSetup.sh clean If you find that you need the Kent command line utilities in addition to the Genome Browser, the `addTools` command will install all the utilities into `/usr/local/bin`: sudo bash browserSetup.sh addTools A majority of these utilities require an `.hg.conf` file in the users home directory. For an example of a minimal `.hg.conf` file, click -[here](http://genome-source.soe.ucsc.edu/gitlist/kent.git/blob/master/src/product/minimal.hg.conf). +[here](http://github.com/ucscGenomeBrowser/kent/blob/master/src/product/minimal.hg.conf). If you find a bug, or if your Linux distribution is not supported, please contact [genome-mirror@soe.ucsc.edu](mailto:genome-mirror@soe.ucsc.edu). More details about the Genome Browser installation are available -[here](http://genome-source.soe.ucsc.edu/gitlist/kent.git/tree/master/src/product). +[here](http://github.com/ucscGenomeBrowser/kent/tree/master/src/product). # All GBiC options Here is the full listing of commands and options supported by the GBiC program: ``` browserSetup.sh [options] [command] [assemblyList] - UCSC genome browser install script command is one of: install - install the genome browser on this machine. This is usually required before any other commands are run. minimal - download only a minimal set of tables. Missing tables are downloaded on-the-fly from UCSC. mirror - download a full assembly (also see the -t option below). No data is downloaded on-the-fly from UCSC.