75643f700f21c6f707600cda76f84106f33a6e53 gperez2 Mon Nov 17 15:45:46 2025 -0800 Making some edits for the release 2 Varaico track announcement, refs #36612 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 4c9d1964a86..1eaf3d3943a 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -53,45 +53,45 @@ <p>You can sign-up to get these announcements via our <a target=_blank href="https://groups.google.com/a/soe.ucsc.edu/g/genome-announce?hl=en">Genome-announce</a> email list. We send around one short announcement email every two weeks.</p> <p>Smaller software changes are not announced here. A summary of the three-weekly release changes can be found <a target=_blank href="https://genecats.gi.ucsc.edu/builds/versions.html">here</a>. For the full list of our daily code changes head to our <a href="https://github.com/ucscGenomeBrowser/kent/commits/master" target=_blank>GitHub page</a>. Lastly, see our <a href="credits.html" target="_blank"> credits page</a> for acknowledgments of the data we host.</p> <!-- ============= 2025 archived news ============= --> <a name="2025"></a> <a name="111425"></a> -<h2>Nov. 14, 2025 Updated Varaico Variants track and new Varaico Variants (suppl) track</h2> +<h2>Nov. 14, 2025 Updated Varaico Variants track and new Varaico Variants (suppl) track for hg38 and hg19</h2> <p> We are pleased to announce the release 2 of the <b>Varaico Variants track</b> and the addition of a new <b>Varaico Variants (suppl) track</b> for the human assemblies <a href="/cgi-bin/hgTrackUi?db=hg38&position=default&g=varsInPubs" target="_blank">hg38/GRCh38</a> and <a href="/cgi-bin/hgTrackUi?db=hg19&position=default&g=varsInPubs" target="_blank">hg19/GRCh37</a>. The Varaico tracks are generated using literature mining methods similar to those used for the <a href="http://bejerano.stanford.edu/AVADA/" target="_blank">AVADA</a> resource. With this update, the Varaico Variants track now contains more than 5.5 million variants.</p> <p> The Varaico Variants (suppl) track shows variants extracted from supplementary data files using -similar methods to those used for the primary Varaico track..</p> +similar methods to those used for the primary Varaico track.</p> <div class="text-center"> <img src="../../images/newsArchImages/varaicoRelease2.png" width='80%'></a> </div> <p> For more information, please visit the <a href="https://varaico.com/" target="_blank">Varaico website</a>.</p> <p> We would like to thank Johannes Birgmeier for generating and making the Varaico data available. We would also like to thank Maximilian Haeussler, Jairo Navarro Gonzalez, and Gerardo Perez for creating and releasing these tracks.</p> <a name="103125"></a> <h2>Oct. 31, 2025 New GENCODE "knownGene" V49 for human (hg38/hg19) and VM38 for mouse (mm39)</h2>