6e27a55f81bd2868c8f8869b6e852678cb956da4 jcasper Sun Nov 16 01:11:21 2025 -0800 Installing updated hg.conf files from UCSC servers diff --git confs/rr.hg.conf confs/rr.hg.conf index d1d1ca09717..0ca995b42f6 100644 --- confs/rr.hg.conf +++ confs/rr.hg.conf @@ -237,19 +237,31 @@ hubSpaceUrl=https://hgw0.soe.ucsc.edu/hubspace ## let users create an api key on the hub development tab to use hubSpace from the command line showHubApiKey=true ## if tusd is running on a different server and is mounted locally, ## rewrite the tusdDataDir value ## with the tusdMountPoint value to check files exist tusdMountPoint=/hubspace # BLAT shows locus name of the match #35993 blatShowLocus=off # new flag for testing rm32751 turn on automatic creation of custom tracks from hgBlat results. autoBlatBigPsl=on # Enables the gear and x icon for hgTracks -greyBarIcons=off +greyBarIcons=on # Enables genark hubs to appear in assembly dropdowns for hgConvert/hgLiftOver genarkLiftOver=on + +# Enables approved hgLogin redirect +login.approvedReturn=https://genome.ucsc.edu/,https://genome-euro.ucsc.edu/,https://genome-asia.ucsc.edu/ + +# Enables the QuickLift checkbox on hgConvert +browser.quickLift=on +# Additional settings for QuickLift +quickLift.lengthLimit=100000 +quickLift.insColor=64,127,0,64 +quickLift.delColor=0,0,127,64 +quickLift.doubleColor=127,127,127,64 +quickLift.mismatchColor=255,0,0,64