172029e2893855d715acbfb8c69f30380a5c45ac
max
  Fri Nov 14 08:34:01 2025 -0800
creating phased variants track,refs #36642

diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index 4988c6def8a..80b9a69a942 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -1,58 +1,46 @@
 track varFreqs
-shortLabel Variants of the World
-longLabel Variant Frequencies from various population-specific or national Projects
+shortLabel Variant Frequencies
+longLabel Variant Frequencies from various cohorts or national projects
 group varRep
 type bed 12
 visibility hide
 superTrack on
 
-        track mexbb
-        shortLabel Mexico Biobank, 6k Array
-        longLabel Phased Variants: Mexico Biobank 6k Array
-        tableBrowser off
-        parent varFreqs on
-        bigDataUrl /gbdb/$D/varFreqs/mexbb/MXBv2.vcf.gz
-        visibility pack
-        type vcfTabix
-        hapClusterEnabled true
-        dataVersion Nov 2025 (hg38 lift)
-        priority 0.5
-
         track me
         shortLabel Regeneron Million Exomes 983k WES
         longLabel Variant Frequencies: Regeneron One Million Exomes (ME) Project - 983k WGS
         tableBrowser off
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz
         visibility pack
         type vcfTabix
         hapClusterEnabled true
         dataVersion 10/04/2023, v1.1.3
+        tableBrowser off
         priority 1
 
         track allofus
         shortLabel AllOfUs v7 245k WGS
         longLabel Variant Frequencies: AllOfUs - v7 245k WGS - BROKEN AFTER CHR8
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/allofus/allOfUs.locAncFreq.sort.vcf.gz
         dataVersion V7
         visibility pack
         priority 2.5
 
-
         track topmed
         shortLabel NHLBI TOPMED 10 151k WGS
         longLabel Variant Frequencies: NHLBI TOPMED - 151k WGS
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/topmed/topmed10.vcf.gz
         dataVersion Freeze 10
         visibility pack
         priority 2
 
         track mcps
         shortLabel Mexico City Prospective Study 10k WGS+141k WES
         longLabel Variant Frequencies: Mexico City Prospective Study (MCPS)
         tableBrowser off
         parent varFreqs on
@@ -170,60 +158,30 @@
              parent ALFA on
              shortLabel NCBI ALFA: Latin American 2
              bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA_LEN.bb
              type bigBed 9 + .
              url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
              urlLabel NCBI Variation Page
 
              track ALFA_OTR
              parent ALFA on
              shortLabel NCBI ALFA: Other
              bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA_OTR.bb
              type bigBed 9 + .
              url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
              urlLabel NCBI Variation Page
 
-        track hgdp
-        shortLabel Human Genome Diversity Project, 1k WGS
-        longLabel Phased Variants: Human Genome Diversity Project (HGDP) - 1043 samples, isolated populations
-        type vcfTabix
-        parent varFreqs on
-        bigDataUrl /gbdb/$D/varFreqs/hgdp/hgdp_wgs.20190516.full.vcf.gz
-        visibility pack
-        dataVersion 2019-05-16
-        priority 0.1
-
-        track sgdp
-        shortLabel Simons Genome Diversity Project 0.3k WGS
-        longLabel Phased Variants: Simons Genome Diversity Project - 279 samples, unmixed populations
-        type vcfTabix
-        parent varFreqs on
-        bigDataUrl /gbdb/$D/varFreqs/sgdp/SGDP.nh2.vcf.gz
-        visibility pack
-        dataVersion 2016-12-07 public (hg38 lift)
-        priority 0.2
-
-        track hgdp1k
-        shortLabel gnomAD HGDP+1000G 4k WGS
-        longLabel Phased Variants: gnomAD HGDP + 1000 genomes callset - 4094 whole genomes, 80 populations
-        type vcfTabix
-        parent varFreqs on
-        bigDataUrl /gbdb/$D/varFreqs/hgdp1k/hgdp1k.vcf.gz
-        visibility pack
-        dataVersion v 3.1.2
-        priority 0.3
-
         track gasp
         shortLabel GenomeAsia Pilot Subs 1.7k WGS
         longLabel Variant Frequencies: GenomeAsia Pilot - Substitutions
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.subst.vcf.gz
         visibility pack
 
         track gaspIndel
         shortLabel GenomeAsia Pilot Indels 1.7k WGS
         longLabel Variant Frequencies: GenomeAsia Pilot - Indels
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/All.indels.annot.cont_withmaf.vcf.gz
         visibility pack