caa794e0cc58eb9996fd610aefffbefdb2df4996 max Fri Nov 14 05:37:02 2025 -0800 adding aou test to varFreqs track, refs #36642 diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra index 3f374a06e12..c045498decb 100644 --- src/hg/makeDb/trackDb/human/varFreqs.ra +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -18,30 +18,41 @@ dataVersion Nov 2025 (hg38 lift) priority 0.5 track me shortLabel Regeneron Million Exomes 983k WES longLabel Variant Frequencies: Regeneron One Million Exomes (ME) Project - 983k WGS tableBrowser off parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz visibility pack type vcfTabix hapClusterEnabled true dataVersion 10/04/2023, v1.1.3 priority 1 + track allofus + shortLabel AllOfUs v7 245k WGS + longLabel Variant Frequencies: AllOfUs - v7 245k WGS - BROKEN AFTER CHR8 + type vcfTabix + parent varFreqs on + bigDataUrl /gbdb/$D/varFreqs/allofus/allOfUs.locAncFreq.sort.vcf.gz + dataVersion V7 + visibility pack + priority 2.5 + + track topmed shortLabel NHLBI TOPMED 10 151k WGS longLabel Variant Frequencies: NHLBI TOPMED - 151k WGS type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/topmed/topmed10.vcf.gz dataVersion Freeze 10 visibility pack priority 2 track mcps shortLabel Mexico City Prospective Study 10k WGS+141k WES longLabel Variant Frequencies: Mexico City Prospective Study (MCPS) tableBrowser off parent varFreqs on @@ -56,31 +67,31 @@ longLabel Variant Frequencies: Japan 61k - ToMMO SNV+Indels type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/tommo61kjpn/tommo-61kjpn-20250616-GRCh38-snvindel-af-autosome.vcf.gz visibility pack dataVersion 2025-06-16 priority 5 track ALFA compositeTrack on parent varFreqs on visibility pack itemRgb on type bigBed 9 + . shortLabel NCBI ALFA 408k WGS/WES/array - longLabel Variant Frequencies: NCBI ALFA (Allele Frequency Aggregator) from dbGaP - 408k mixed WGS/WES/array + longLabel Variant Frequencies: NCBI ALFA (dbGaP data) - 408k mixed WGS/WES/array mouseOverField frequency html ALFA.html filter.score 10 priority 4 dataVersion R4 track ALFA_GLB parent ALFA on shortLabel NCBI ALFA: Global bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA_GLB.bb type bigBed 9 + . url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab urlLabel NCBI Variation Page track ALFA_EUR