File Changes for galt

v491_base to v492_preview (2025-11-24 to 2025-12-01) v492

• src/hg/hgTables/mainPage.c
  • lines changed 4, context: html, text, full: html, text
    4140d0e2412d8edb63d1aaac196f6c98612f3328 Fri Nov 21 16:52:25 2025 -0800
    Add hgTables Summary and intersection buttons for knownCanonical. refs #rm36524
  • lines changed 1, context: html, text, full: html, text
    7412238abe94bb147ccb3570d4766d8bc063dbfe Mon Nov 24 13:05:48 2025 -0800
    debug cleanup
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 4, context: html, text, full: html, text
    5ed8f560efb5af18673ae76180e24ec493698cb2 Thu Nov 20 17:07:25 2025 -0800
    Fixes pdf output problem. We set hgFindMatches = NULL for pdf output to suppress the item search highlight. But loading in bigBedTrack and squishPackyMode both depend on that search term, so we cannot just set it to NULL. A copy of it called origHgFindMatches exists and is available to those routines that need the original search value.
• src/hg/hgTracks/hgTracks.c
  • lines changed 3, context: html, text, full: html, text
    5ed8f560efb5af18673ae76180e24ec493698cb2 Thu Nov 20 17:07:25 2025 -0800
    Fixes pdf output problem. We set hgFindMatches = NULL for pdf output to suppress the item search highlight. But loading in bigBedTrack and squishPackyMode both depend on that search term, so we cannot just set it to NULL. A copy of it called origHgFindMatches exists and is available to those routines that need the original search value.
• src/hg/hgTracks/hgTracks.h
  • lines changed 2, context: html, text, full: html, text
    5ed8f560efb5af18673ae76180e24ec493698cb2 Thu Nov 20 17:07:25 2025 -0800
    Fixes pdf output problem. We set hgFindMatches = NULL for pdf output to suppress the item search highlight. But loading in bigBedTrack and squishPackyMode both depend on that search term, so we cannot just set it to NULL. A copy of it called origHgFindMatches exists and is available to those routines that need the original search value.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 3, context: html, text, full: html, text
    5ed8f560efb5af18673ae76180e24ec493698cb2 Thu Nov 20 17:07:25 2025 -0800
    Fixes pdf output problem. We set hgFindMatches = NULL for pdf output to suppress the item search highlight. But loading in bigBedTrack and squishPackyMode both depend on that search term, so we cannot just set it to NULL. A copy of it called origHgFindMatches exists and is available to those routines that need the original search value.
• src/hg/lib/trackHub.c
  • lines changed 11, context: html, text, full: html, text
    4165c886d31e4e347d85e0fc134fc085af2bf31f Mon Nov 24 13:51:31 2025 -0800
    Fixes the concern where externally loaded non-local-hubs might want to use protected local bigDataUrls such as /gbdb/hg38/bbi/hgmd.bb, which will now be forbidden when loading the tracks. Tells the user which setting has the invalid url and that such usage is not allowed. It also supports udc.localDir setting for GBIB and mirrors. As usual that should be set carefully as mentioned in the ticket, and also provides a way to test with and without udc.localDir allowing paths. refs #34544