- On this page you can request a whole-genome alignment between two genomes that are on the UCSC Genome Browser. + On this page you can request a whole-genome alignment between two + genomes that are on the UCSC Genome Browser. Such alignments can take thousands of compute hours to produce. - The alignment here will be produced on the Galaxy platform, using a - workflow that uses TACC high performance compute GPU resources. The full + The alignment here will be generated on the Galaxy platform, using a + workflow that uses the TACC high performance compute GPU resources. The full process may take up to a few days. You will receive an email when it is complete.
- Once complete, your will find two new tracks on both assemblies, one with the full alignment results ("all chains"), and one - track with the best alignment (single coverage) for every basepair, which can be used for "liftOver". - Since these tracks are single-coverage on the current genome, the alignments are reciprocal so one is produced - per assembly. - For more information on how to download these chain files and use liftOver, see --here--. - Once these tracks are available, you can also use our Quicklift feature to lift annotations on-the-fly, as you browser, - see --here-- for more information. - + Once complete, your will find two new tracks on both assemblies, one with + the full alignment results ("all chains"), and one + track with the best alignment (single coverage) for every basepair, + which can be used for "liftOver". + Since these tracks are single-coverage on the current genome, the + alignments are reciprocal so one is produced per assembly. + For more information on how to download these chain files and use + liftOver, see also: Converting coordinates. + Once these tracks are available, you can also use our Quicklift feature + to lift annotations on-the-fly, as you use the browser, + see also: Quick Lift guide for more information.
-If one of the two genomes is not on the UCSC browser yet, please request it first on our Assembly Request Page, then come back here later. +
If one of the two genomes is not on the UCSC browser yet, please + request it first on our + Assembly Request Page, then come back here when the + assembly has been added to the browser.