fbe00baffdd77e3280b684b54757de7090cf21e9
gperez2
Tue Dec 16 16:37:41 2025 -0800
Updating the EVA SNP track description, adding pennantIcon, and adding beta tag, refs #36512
diff --git src/hg/makeDb/trackDb/evaSnp.alpha.ra src/hg/makeDb/trackDb/evaSnp.alpha.ra
index c4bae15c13a..c4108b2baed 100644
--- src/hg/makeDb/trackDb/evaSnp.alpha.ra
+++ src/hg/makeDb/trackDb/evaSnp.alpha.ra
@@ -1,22 +1,23 @@
track evaSnpContainer
shortLabel EVA SNP
longLabel Short Genetic Variants from European Variant Archive
group varRep
type bigBed 9 +
compositeTrack on
visibility dense
+pennantIcon Updated red ../goldenPath/newsarch.html#121825 "New EVA SNP Release 8 track Dec. 18, 2025"
track evaSnp
shortLabel EVA SNP Release 3
longLabel Short Genetic Variants from European Variant Archive Release 3
type bigBed 9 +
parent evaSnpContainer off
itemRgb on
mouseOver Ref/Alt allele(s): $ref>$alt
Var type: $ucscClass
AA change: $aaChange
bigDataUrl /gbdb/$D/bbi/evaSnp.bb
url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
filterLabel.varClass Variant class from EVA SO term
filterLabel.ucscClass Functional effect per UCSC Variant Annotation
filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
filterType.ucscClass multipleListOnlyOr