Commits for jcasper

v492_base to v493_preview (2025-12-15 to 2026-01-12) v493

34f380bfb0b4003a23fe2e00be6bdac6af326cda Mon Dec 15 15:20:13 2025 -0800

• Adding hicArcLimit and hicArcLimitEnabled settings to let people prevent excessive arc counts from overwhelming a Hi-C display with data, refs #36774
  • src/hg/hgTracks/hicTrack.c - lines changed 22, context: html, text, full: html, text
  • src/hg/inc/hicUi.h - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/hicUi.c - lines changed 56, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text

b08d682ae70813b2e919850d267d8f85946278f3 Sun Dec 21 01:11:21 2025 -0800

• Installing updated hg.conf files from UCSC servers
  • confs/asia.hg.conf - lines changed 1, context: html, text, full: html, text
  • confs/euro.hg.conf - lines changed 1, context: html, text, full: html, text
  • confs/hgwbeta.hg.conf - lines changed 2, context: html, text, full: html, text
  • confs/rr.hg.conf - lines changed 1, context: html, text, full: html, text

57aba7b8fb23d9bdbeceb665a001452e6d7a6b99 Thu Jan 8 00:37:48 2026 -0800

• An attempt at better auto-scaling for Hi-C colors in arc mode, refs #36774
  • src/hg/hgTracks/hicTrack.c - lines changed 33, context: html, text, full: html, text
  • src/hg/lib/hicUi.c - lines changed 2, context: html, text, full: html, text

4c014b45c54d2754938d2f8a2f3a1e5c070ca673 Sun Jan 11 01:11:15 2026 -0800

• Installing updated hg.conf files from UCSC servers
  • confs/hgwbeta.hg.conf - lines changed 1, context: html, text, full: html, text
  • confs/hgwdev.hg.conf - lines changed 4, context: html, text, full: html, text

1c07e6e9103123809e420560f2ebf370dde996ea Sun Jan 11 21:24:24 2026 -0800

• Docs for the hicArcLimit and hicArcLimitEnabled setings, which control how many arcs are actually drawn in arc mode, refs #36774
  • src/hg/htdocs/goldenPath/help/trackDb/changes.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 8, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 21, context: html, text, full: html, text

f85252e8231a8fef12bfcc37a3a6c20a7e1f9e19 Mon Jan 12 10:03:34 2026 -0800

• Adjustments to the default hicArcLimit value, refs #36774
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 12, context: html, text, full: html, text