d3e77d28330c5c21d88a9deaef31d80dadd966ea lrnassar Mon Jan 5 11:09:33 2026 -0800 Squashing stale pennantIcons, no RM. diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index 8fa57a3a02d..5bb72086f6d 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -215,31 +215,30 @@ dataVersion /gbdb/$D/bbi/varChatVersion.txt html varChat.html track pubtator shortLabel PubTator Variants longLabel dbSNP variants and other genetic variants grounded to dbSNP by tmVar; collected by PubTator3 visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/pubs2/pubtatorDbSnp.bb noScoreFilter on exonNumbers off itemRgb on parent varsInPubs pack urls pubmedIds="https://www.ncbi.nlm.nih.gov/pubmed/$$" mouseOver $name found in ${numPubmedIds} PubMed articles - pennantIcon New red ../goldenPath/newsarch.html#080125 "Released Aug. 01, 2025" html varsInPubs track varaico shortLabel Varaico Variants longLabel Varaico Variants extracted from full text publications, titles, and abstracts visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/varaico.bb noScoreFilter on exonNumbers off # itemRgb on dataVersion release 2 (20251110) parent varsInPubs pack urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect @@ -5566,31 +5565,30 @@ longLabel HUGO Gene Nomenclature bigDataUrl /gbdb/$D/hgnc/hgnc.bb type bigBed 9 + labelFields symbol, geneName, name, uniprot_ids, ensembl_gene_id, ucsc_id, refseq_accession defaultLabelFields symbol mouseOver <b>Symbol</b>: <a href="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$symbol">$symbol</a><br> <b>ID</b>: $name<br> <b>Alias symbol</b>: $alias_symbol<br> <b>Previous symbols</b>: $prev_symbol filterValues.locus_type Y RNA,long non-coding RNA,micro RNA,misc RNA,ribosomal RNA,small nuclear RNA,small nucleolar RNA,transfer RNA,vault RNA,T cell receptor gene,T cell receptor pseudogene,complex locus constituent,endogenous retrovirus,gene with protein product,immunoglobulin gene,immunoglobulin pseudogene,pseudogene,readthrough,unknown group genes url https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$ urlLabel HGNC Details: searchIndex name searchTrix /gbdb/$D/hgnc/search.ix skipEmptyFields on itemRgb on noScoreFilter on -pennantIcon Updated red ../goldenPath/newsarch.html "Updated July 31, 2025" searchTable hgnc searchMethod exact searchType bigBed searchPriority 1.02 shortCircuit 1 track ncbiRefSeqSelect parent refSeqComposite off priority 8 type genePred shortLabel RefSeq Select and MANE longLabel NCBI RefSeq Select and MANE subset: A single representative transcript trackHandler ncbiRefSeq idXref ncbiRefSeqLink mrnaAcc name