42238ba03380b2bc19818cabb5576b0cfb6d8644 markd Mon Jan 12 07:10:04 2026 -0800 removed warning comment that is no long true diff --git src/utils/pslMapPostChain/pslMapPostChain.c src/utils/pslMapPostChain/pslMapPostChain.c index 5cfa08c34a8..4e47373017a 100644 --- src/utils/pslMapPostChain/pslMapPostChain.c +++ src/utils/pslMapPostChain/pslMapPostChain.c @@ -6,33 +6,31 @@ #include "hash.h" #include "psl.h" #include void usage() /* Explain usage and exit. */ { errAbort("pslMapPostChain - Post genomic pslMap (TransMap) chaining.\n" "usage:\n" " pslMapPostChain [options] inPsl outPsl\n" "\n" "Post genomic pslMap (TransMap) chaining. This takes transcripts\n" "that have been mapped via genomic chains adds back in\n" "blocks that didn't get include in genomic chains due\n" "to complex rearrangements or other issues.\n" - "This can also handle other PSLs, including protein-RNA alignments\n" - "\n" - "This program has not seen much use and may not do what you want\n"); + "This also handles other PSLs, including protein-RNA alignments\n"); } static struct optionSpec optionSpecs[] = { {"h", OPTION_BOOLEAN}, {"help", OPTION_BOOLEAN}, {NULL, 0} }; /* max distance to attempt to chain over */ static int maxAdjacentDistance = 50*1000*1000; // 50mb /* special status used to in place of chain */ static const int CHAIN_NOT_HERE = -1; static const int CHAIN_CAN_NOT = -2;