598adc82015a64774f87a3cd2d6a97e77906544b
max
  Thu Jan 8 08:13:11 2026 -0800
adding SFARI SPARK WES to variant frequencies track, refs #36642

diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index b4ab2509e6f..d09171e5d10 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -1,55 +1,65 @@
 track varFreqs
 shortLabel Variant Frequencies
 longLabel Variant Frequencies from various cohorts or national projects
 group varRep
 type bed 12
 visibility hide
 superTrack on
 
         track allofus
         shortLabel AllOfUs v7 245k WGS
-        longLabel Variant Frequencies: AllOfUs - v7 245k WGS
+        longLabel Variant Frequencies: AllOfUs - v7 245k WGS, only with allele count >= 20
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/allofus/allOfUs.locAncFreq.vcf.gz
         dataVersion V7
         visibility pack
         priority 0.5
 
         track me
         shortLabel Regeneron Million Exomes 983k WES
         longLabel Variant Frequencies: Regeneron One Million Exomes (ME) Project - 983k WGS
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz
         visibility pack
         type vcfTabix
         hapClusterEnabled true
         dataVersion 10/04/2023, v1.1.3
         tableBrowser off
         priority 1
 
         track topmed
         shortLabel NHLBI TOPMED 10 151k WGS
         longLabel Variant Frequencies: NHLBI TOPMED - 151k WGS
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/topmed/topmed10.vcf.gz
         dataVersion Freeze 10
         visibility pack
         priority 2
 
+        track sfariSparkExomes
+        shortLabel SFARI Spark 140k WES
+        longLabel Variant Frequencies: SFARI SPARK - 140k WES
+        type vcfTabix
+        parent varFreqs on
+        bigDataUrl /gbdb/$D/varFreqs/sfari/SPARK.iWES_v3.2024_08.deepvariant.sites.vcf.gz
+        dataVersion iWES v3 2024_08
+        visibility pack
+        priority 2.5
+
         track mcps
         shortLabel Mexico City Prospective Study 10k WGS+141k WES
         longLabel Variant Frequencies: Mexico City Prospective Study (MCPS)
         tableBrowser off
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz
         visibility pack
         type vcfTabix
         dataVersion May 2023 (v1.2.0)
         priority 3
 
         track tommo60kjpn
         shortLabel Japan ToMMO 61k WGS
         longLabel Variant Frequencies: Japan 61k - ToMMO SNV+Indels
         type vcfTabix
@@ -177,30 +187,31 @@
         longLabel Variant Frequencies: Finnland Finngen - 500k samples, arrays, imputation used 8.5k WGS
         priority 4.5
         bigDataUrl /gbdb/$D/varFreqs/finngen/finnge_R12_annotated_variants_v1.vcf.gz
         dataVersion R12
         tableBrowser off
 
         track swefreq
         parent varFreqs on
         visibility pack
         type vcfTabix
         shortLabel Sweden SweGen 1k WGS
         longLabel Variant Frequencies: Sweden SweGen - 1k WGS
         priority 4.7
         bigDataUrl /gbdb/$D/varFreqs/swefreq/swegen_frequencies_fixploidy_GRCh38_20190204.vcf.gz
         dataVersion 20251201
+        tableBrowser off
 
         track gasp
         shortLabel GenomeAsia Pilot Subs 1.7k WGS
         longLabel Variant Frequencies: GenomeAsia Pilot - Substitutions
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.subst.vcf.gz
         visibility pack
 
         track gaspIndel
         shortLabel GenomeAsia Pilot Indels 1.7k WGS
         longLabel Variant Frequencies: GenomeAsia Pilot - Indels
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/All.indels.annot.cont_withmaf.vcf.gz