fb0974b26c4adb2ed270215ee30899f13a5fced4 mspeir Thu Dec 18 16:41:37 2025 -0800 adding announcement for ancient hominids tracks, refs #36586 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 7baa682b0b4..9693d92eb40 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -52,30 +52,52 @@ <p>You can sign-up to get these announcements via our <a target=_blank href="https://groups.google.com/a/soe.ucsc.edu/g/genome-announce?hl=en">Genome-announce</a> email list. We send around one short announcement email every two weeks.</p> <p>Smaller software changes are not announced here. A summary of the three-weekly release changes can be found <a target=_blank href="https://genecats.gi.ucsc.edu/builds/versions.html">here</a>. For the full list of our daily code changes head to our <a href="https://github.com/ucscGenomeBrowser/kent/commits/master" target=_blank>GitHub page</a>. Lastly, see our <a href="credits.html" target="_blank"> credits page</a> for acknowledgments of the data we host.</p> <!-- ============= 2025 archived news ============= --> <a name="2025"></a> +<a name="121525"></a> +<h2>Dec. 15, 2025 New gnomAD Missense Deleteriousness Prediction by Constraint (MPC) track for hg19</h2> +<p> +We are happy to announce the release of the +<a href="/cgi-bin/hgTrackUi?db=hg38&position=default&g=ancient" + target="_blank">Ancient Hominids track</a> +featuring data from Archaic Sequence Hub (ArcSeqHub). This track shows variants +identified by ArcSeqHub's remapping of high-quality Altai Neanderthal and +Denisovan genomes onto the hg38/GRCh38 genome. Variants are divided into two subtracks, +one for Denisovian variants and another for Neanderthal variants. +UCSC has removed those positions from the VCF without an alternate allele to show only +variants that are present in the ancient genomes.</p> +<div class="text-center"> +<img src="/images/newsArchImages/ancientHominids.png" width='80%'></a> +</div> +<p> +We would like to thank the <a href="http://www.arcseqhub.com/plot/-1/" +target="_blank">ArcSeqHub</a> authors for making the data available. +We would also like to thank Maximilian Haeussler and Matthew Speir for the +creation and release of this track.</p> + + <!-- <a name="120525"></a> <h2>Dec. 05, 2025 Hub Space: Host Your Track Hubs Directly on the Genome Browser</h2> <p> We are excited to introduce <a href="/cgi-bin/hgHubConnect#hubUpload">Hub Space</a>, a new hosting service that allows users to upload and visualize track hub files directly on the UCSC Genome Browser without relying on third-party hosting services such as Dropbox, Google Drive, or AWS. </p> <p> <b>Hub Space Features:</b><br> Each account is allocated 10 GB of storage space. While we strive to maintain uninterrupted access, please maintain your own backups. Data persistence over the long term is not guaranteed. To request additional storage space, please