Commits for lrnassar

v493_preview to v493_preview2 (2026-01-12 to 2026-01-19) v493

cc483764d1a461b7e918c18847e0d5a03eba537a Tue Jan 13 16:20:20 2026 -0800

• Releasing the cCREs track, refs #34109
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.cCREs.alpha.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.encode3.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

be656b407a11f725049772fdd55761c3b20ce940 Wed Jan 14 13:57:40 2026 -0800

• Fixing small typo in track description page, refs #34109
  • src/hg/makeDb/trackDb/human/hg38/coreCollection.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

f29825cc3b3ce2c55f8aeb5b4756aa960f9905b2 Wed Jan 14 14:00:36 2026 -0800

• Releasing and announcing the new ENCODE4 cCREs track, refs #34109
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 113, context: html, text, full: html, text
  • src/hg/htdocs/images/encode4cCREsNews.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra - lines changed 2, context: html, text, full: html, text

c6b77b666eeacc402d28f9d9585458e7960d70a5 Wed Jan 14 17:32:42 2026 -0800

• Capitalizing and fixing the referenced gene models to reference the correct mouse release vs. the human GENCODE release on both. Refs #36908
  • src/hg/makeDb/trackDb/human/hg38/clsLongReadRna.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/clsLongReadRna.html - lines changed 5, context: html, text, full: html, text