9029dffcc033ff1b3b403f78af0faf37a055044f hiram Fri Feb 13 09:03:44 2026 -0800 fix bug in ix links for ncbiGene tracks refs #37109 diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh index ca8de5279fa..881e49b7323 100755 --- src/hg/utils/automation/asmHubTrackDb.sh +++ src/hg/utils/automation/asmHubTrackDb.sh @@ -689,31 +689,30 @@ ################################################################### ## setup ncbiGene only if ncbiRefSeq is not present if [ "${haveNcbiRefSeq}" = "no" ]; then # may or may not have a searchTrix for ncbiGene, assume none searchTrix="" # check to see if there is a index for ncbiGene if [ -s ${buildDir}/trackData/ncbiGene/$asmId.ncbiGene.ix ]; then searchTrix=" searchTrix ixIxx/$asmId.ncbiGene.ix" fi if [ -s ${buildDir}/trackData/ncbiGene/$asmId.ncbiGene.bb ]; then -printf "working on ncbiGene\n" 1>&2 rm -f $buildDir/bbi/${asmId}.ncbiGene.bb rm -f $buildDir/ixIxx/${asmId}.ncbiGene.ix rm -f $buildDir/ixIxx/${asmId}.ncbiGene.ixx rm -f ${buildDir}/genes/${asmId}.ncbiGene.gtf.gz export longLabel="Gene models submitted to GenBank, ENA, DDBJ" export shortLabel="NCBI GenBank" # Note: 2025-12-02 - this isn't valid, since we are in this section due # to there being no NCBI RefSeq track. Even though this # is a RefSeq assembly, these are other gene models, not # from RefSeq # if [ "$asmType" = "refseq" ]; then # longLabel="RefSeq gene predictions from NCBI" # shortLabel="NCBI RefSeq" # fi if [ -s ${buildDir}/trackData/ncbiGene/${asmId}.ncbiGene.gtf.gz ]; then