Commits for lrnassar

v494_preview2 to v494_base (2026-02-09 to 2026-02-16) v494

7bb8ecf3a5d724c453e36901b74e027333843a30 Mon Feb 9 15:57:54 2026 -0800

• Fixing JASPAR visibilities on mm10 and hg19, I created the 2026 update, but those two assemblies don't have the 2026 track and need the 2024 on by default instead. Refs #37082
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 3, context: html, text, full: html, text

566f26928ab033f905f3fd87493ec5d94db4c59d Mon Feb 9 17:11:08 2026 -0800

• Adding the hgFixed table for the PFMs show up on the TFs hgc pages, refs #36264
  • src/hg/makeDb/doc/hg38/jaspar.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/hgFixed.txt - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/jaspar.ra - lines changed 1, context: html, text, full: html, text

ff44390948a53ad9147abac1c39752932b81502c Tue Feb 10 13:31:32 2026 -0800

• Typo feedback from CR. Refs #37093
  • src/hg/makeDb/trackDb/jaspar.html - lines changed 1, context: html, text, full: html, text

75c863a2ea9c43bfa455f69fd444eba3f0b63305 Tue Feb 10 17:25:33 2026 -0800

• Removing 'showCfg on' because that needs a composite with multiple children, and for some assemblies this is the first JASPAR release. Refs #36264
  • src/hg/makeDb/trackDb/jaspar.ra - lines changed 2, context: html, text, full: html, text

79e20fc51607401bba064189e0ef5f44259cc969 Wed Feb 11 11:53:32 2026 -0800

• Shortening the confirmation message, as most users have small attention spans. Refs #36704
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text

84a62d63711c77e5bacd96e8a3e6566dfe14e78a Wed Feb 11 15:20:44 2026 -0800

• Removing some of the white space padding around the new recent genomes menu, refs #36535
  • src/hg/htdocs/style/jWest.css - lines changed 1, context: html, text, full: html, text

64675c24b3136d06f2123a1039a034114bd597b6 Thu Feb 12 13:35:41 2026 -0800

• Improving error messages mostly on hubCheck, with a few trackHub.c cases. Overall making the messages more informative to tell users what went wrong and what they can do to fix it, refs #35718
  • src/hg/lib/trackHub.c - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 18, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/autoScaleHub.txt - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/badGroups.output.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/badSubGroups.output.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/badType.output.txt - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/goodGroups.output.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/manyErrors.output.txt - lines changed 39, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/noCompositeGroup.output.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/noLongLabel.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/output1.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/supertrackChild.txt - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/makefile - lines changed 2, context: html, text, full: html, text

2cb1f903afe83b27c2561fb2cff129d27878a46a Thu Feb 12 15:23:10 2026 -0800

• Adding a new flag, -allowWarnings, to hubCheck so that it doesn't exit out when it raises warnings. This way it doesn't break pipelines on common warning complaints like track desc pages, refs #30723
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 23, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/makefile - lines changed 5, context: html, text, full: html, text

5c3b3ae39b7eb61b93be63c263a5f9a403b30f0d Fri Feb 13 14:21:18 2026 -0800

• Fixing edgecase in CDNs ticket, the JS was loading from the wrong location on that one page set to dynmatically load it (js/, not js/external/) and the local css we have doesn't have fontawesome arrows, so it was changed to use the ones we have. Refs #33998
  • src/hg/htdocs/inc/gbPageStart.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/inc/gbPageStartHardcoded.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/staticStyle/gbStatic.css - lines changed 21, context: html, text, full: html, text
  • src/hg/htdocs/style/gbStatic.css - lines changed 21, context: html, text, full: html, text

99c8b296447db2356a7669bcf6ee2c7ea89d138f Fri Feb 13 14:23:09 2026 -0800

• Forgot to commit the make tests for the new allowWarnings flag, refs #30723
  • src/hg/utils/hubCheck/tests/expected/allowWarnings.output.txt - lines changed 10, context: html, text, full: html, text