e4b550095f70e0d9b828dccaa740f9a49ecc3e15
brianlee
  Mon Jan 26 14:27:52 2026 -0800
Cutting Grant Year 2 off milestone, revamping Broads to have Spreadsheet mapping ADGC4_Aim3_year4_item2 -> ADGC4_Aim3_year4_D_16

diff --git src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
index f5ab9dbb9ce..62bd0836599 100755
--- src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
+++ src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
@@ -19,31 +19,30 @@
     <h5 class="cirm-page-title-text">SSPsyGene Milestone Charts</h5>
   </div>
   <a name="ADGC1"></a>
   <!-- Start of ADGC1 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC1 UCLA Chart</h5></div>
   <div class="row">
     <div class="col-md-12">
     <pre class="mermaid">
     gantt
     dateFormat  YYYY-MM-DD
     axisFormat  %Y-Q%q
     title       ADGC1  UCLA  [RM1MH132651]
 
 
     section Grant Year                                                                           
-    Start Grant Year 2     :milestone, m1, 2024-03-31, 0d                                       
     Start Grant Year 3     :milestone, year3_ucla, 2025-03-31, 0d                                       
     Start Grant Year 4     :milestone, m1, 2026-03-31, 0d                                        
     Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
     click year3_ucla href "https://docs.google.com/spreadsheets/d/1Ml_UXDHE4UZo2kjLp1aZLa0KxLtLSnVi/edit?gid=1138387919#gid=1138387919&range=J1:M20"
         
     section AIM 1 
 
     section AIM 2
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from Capstone Lines   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds  : crit, milestone, ADGC1_I_8, 2025-03-31, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH B   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_JK_8, 2025-09-30, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH C   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_LM_8, 2026-03-31, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH D   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_NO_8, 2026-10-01, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH E   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_P_8, 2026-12-31, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH F   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_Q_8, 2027-03-31, 0d
@@ -77,31 +76,30 @@
     </pre>
     </div>
   </div>
   <a name="ADGC2"></a>
   <!-- Start of ADGC2 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC2 MiNND timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">    
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC2  MiNND [RM1MH133065]
 
         section Grant Year
-        Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, year3_minnd, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
         click year3_minnd href "https://docs.google.com/spreadsheets/d/1GNrJaIjs6nPlFY4j2AlZSlTDf2-mi17d/edit?gid=1137576441#gid=1137576441&range=J1:M34"
         
         section Aim 1
 
         section Aim 2
         
         Submit scRNA-seq data for 72 edited lines (3×23 gene mutations + 1 NTC) from last quarter. : crit, milestone, ADGC2_J_11, 2025-06-30, 0d 
         Submit scRNA-seq data for 72 edited lines (3×23 mutations + 1 NTC) & L1-L3 datasets (fastq, RDS, Excel) from last year. : crit, milestone, ADGC2_K_11, 2025-09-30, 0d
         Submit scRNA-seq data for 72 edited lines (3×23 mutations + 1 NTC) & L1-L3 datasets (fastq, RDS, Excel) from last quarter  : crit, milestone, ADGC2_L_11, 2025-12-31, 0d
         Submit scRNA-seq data for 72 edited lines (3×23 mutations + 1 NTC) & L1-L3 datasets (fastq, RDS, Excel) from last quarter : crit, milestone, ADGC2_M_11, 2026-03-31, 0d
 
@@ -135,31 +133,30 @@
       </pre>
     </div>
   </div>
   <a name="ADGC3"></a>
   <!-- Start of ADGC3 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC3 Yale timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">    
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC3  Yale [RM1MH132648]
 
         section Grant Year
-        Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, year3_yale, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
         click year3_yale href "https://docs.google.com/spreadsheets/d/10xWymZXsDlDQ9uwU5YPAKwyflUMzpDS4/edit?gid=1305684354#gid=1305684354&range=J1:M25"
 
         section Aim 1
         Submit initial data (L0, L1) CRISPRi MEA and calcium imaging of 15 ASD genes in iGLUTs and/or iGABAs (ARID1B - SHANK3) : crit, milestone, ADGC3_N_5, 2027-03-31, 0d
         Submit initial data (L0, L1) CRISPRi ECCITEseq, KOLF2.2J and CW20107 in iGLUTs (fastq), 10 capstone genes (ARID1B - SMARCC2) : crit, milestone, ADGC3_K_6, 2025-09-30, 0d
         Submit initial data (L0, L1) CRISPRi organoid models ECCITEseq of 10 capstone genes (ARID1B - SMARCC2) genes in KOLF2.2J : crit, milestone, ADGC3_N_6, 2027-03-31, 0d
         Submit ECCITEseq data (L0, L1) to DRACC for 29 NDD genes (ANK3 - WAC) in induced NPCs, glutamatergic neurons, and GABAergic neurons; iGLUT 3182-3-clone5 (iNPC, d7 iGLUT and d21 iGLUT) and iGABA 553-3-clone34 (d36 iGABA) : done, milestone, ADGC3_I_7, 2025-03-31, 0d
         Submit L3/L4 data from iGLUT manuscript : crit, milestone, ADGC3_K_7, 2025-09-30, 0d
 
        
         section Aim 2
@@ -181,72 +178,70 @@
       </pre>
     </div>
   </div>
   <a name="ADGC4"></a>
   <!-- Start of ADGC4 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC4 Broad timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">    
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC4  Broad [R01MH128366]
 
         section Grant Year
-        Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, year3_broad, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
         click year3_broad href "https://docs.google.com/spreadsheets/d/1BwaO6rgn0o5nTulC2M6dQe5UMGUWEy-o/edit?gid=2037309850#gid=2037309850&range=D1:D16"
 
         section Aim 1
-        Submit 100,000 scRNA-seq profiles per cell type (fastq) of 191 genes in 3 cell types : crit, milestone, ADGC4_Aim1_year4_item1, 2026-03-31, 0d
-        Submit image dataset of 120 TB (443 genes in 3 cells 5 million profiles) : crit, milestone, ADGC4_Aim1_year4_item2, 2026-03-31, 0d 
+        Submit 100,000 scRNA-seq profiles per cell type (fastq) of 191 genes in 3 cell types : crit, milestone, ADGC4_Aim1_year4_E_3, 2026-03-31, 0d
+        Submit image dataset of 120 TB (443 genes in 3 cells 5 million profiles) : crit, milestone, ADGC4_Aim1_year4_E_4, 2026-03-31, 0d 
         Submit remaining image datasets : crit, milestone, ADGC4_Aim1_year5_item1, 2027-03-31, 0d 
 
         section Aim 2
-        Submit 100,000 scRNA-seq profiles per cell type of 191 genes in 3 cell types (fastq) : crit, milestone, ADGC4_Aim2_year4_item1, 2026-03-31, 0d
-        Submit 50 TB of calcium imaging and MERFISH data : done, milestone, ADGC4_Aim2_year3_item1, 2025-03-31, 0d
-        Submit 5 TB of optical electrophysiology data - DATA QUALITY BEING ASSESSED : crit, milestone, ADGC4_Aim2_year3_item2, 2026-03-31, 0d
-        Submit 5 TB of optical electrophysiology data : crit, milestone, ADGC4_Aim2_year4_item2, 2026-03-31, 0d
+        Submit 100,000 scRNA-seq profiles per cell type of 191 genes in 3 cell types (fastq) : crit, milestone, ADGC4_Aim2_year4_E_9, 2026-03-31, 0d
+        Submit 50 TB of calcium imaging and MERFISH data : done, milestone, ADGC4_Aim2_year3_D_11, 2025-03-31, 0d
+        Submit 5 TB of optical electrophysiology data - DATA QUALITY BEING ASSESSED : crit, milestone, ADGC4_Aim2_year3_D_10, 2026-03-31, 0d
+        Submit 5 TB of optical electrophysiology data : crit, milestone, ADGC4_Aim2_year4_E_10, 2026-03-31, 0d
         Submit remaining optical electrophysiology data : crit, milestone, ADGC4_Aim2_year5_item1, 2027-03-31, 0d
 
         section Aim 3
-        Submit RNA-seq profiles - ANALYSIS / SUBMISSION UNDERWAY : crit, milestone, ADGC4_Aim3_year3_item1, 2025-03-31, 0d
-        Submit RNA-seq profiles from >10,000 cells : crit, milestone, ADGC4_Aim3_year4_item1, 2026-03-31, 0d
+        Submit RNA-seq profiles - ANALYSIS / SUBMISSION UNDERWAY : crit, milestone, ADGC4_Aim3_year3_D_15, 2025-03-31, 0d
+        Submit RNA-seq profiles from >10,000 cells : crit, milestone, ADGC4_Aim3_year4_E_15, 2026-03-31, 0d
         Submit remaining RNA-seq profiles : crit, milestone, ADGC4_Aim3_year5_item1, 2027-03-31, 0d
-        Submit 10 TB of associated images to DRACC : crit, milestone, ADGC4_Aim3_year4_item2, 2026-03-31, 0d
+        Submit 10 TB of associated images to DRACC : crit, milestone, ADGC4_Aim3_year4_D_16, 2026-03-31, 0d
         Submit remaining morphology imaging : crit, milestone, ADGC4_Aim3_year5_item2, 2027-03-31, 0d
 
       </pre>
     </div>
   </div>
     <a name="ADGC5"></a>
     <!-- Start of ADGC5 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC5 Scripps/Broad timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC5  Scripps/Broad [R01MH137042-01/-02]
  
         section Grant Year
-        Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, m1, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
         section Scripps/Broad Reporting Year
         End Scripps/Broad Reporting Year 1     :milestone, year1_scripps, 2025-03-31, 0d
         End Scripps/Broad Reporting Year 2      :milestone, m1, 2026-03-31, 0d
         End Scripps/Broad Reporting Year 3      :milestone, m1, 2027-03-31, 0d
 
         click year1_scripps href "https://docs.google.com/spreadsheets/d/19RWN6-DjIyMpFV2JP4yY5Ta5Xfthieds/edit?gid=744607405#gid=744607405&range=C2:C15"
         
         section Aim 1
         Generate multiomics data for 50 genes in 1 brain region at 1 time point :  V_Y2t1, 2025-03-31,52w
         Submit L0/L1 data to DRACC (Restricted) 175 FASTQ for 75TB overall : crit, milestone, ADGC5_Aim1_year4_item1, 2026-03-31, 0d
 
@@ -255,31 +250,30 @@
       </pre>
     </div>
   </div>
       <a name="ADGC6"></a>
     <!-- Start of ADGC6 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC6 SING Timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC6  Cross-Scale Interrogation of NPD Genes (SING) - PSU/JAX/UTSW/NYU [RM1MH138309]
 
         section Grant Year
-        Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, m1, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
         section SING Reporting Year
         End SING Reporting Year 1      :milestone, year1_SING, 2025-12-31, 0d
         End SING Reporting Year 2      :milestone, m1, 2026-12-31, 0d
 
         click year1_SING href "https://docs.google.com/spreadsheets/d/1pw1muwglklo-gXrC5hadYjSqBjhZOKeh/edit?gid=1827916005#gid=1827916005&range=C2:E23"
 
         section Aim 1
         DRACC data transfer of C57 control MERFISH : crit, milestone, ADGC6_D_8, 2025-09-30, 0d
         DRACC data transfer of first 5 KO mice MERFISH data : crit, milestone, ADGC6_E_7, 2025-12-31, 0d
         DRACC data transfer of 2025 Q4 and 20026 Q1-Q3 KO mice MERFISH data : crit, milestone, ADGC6_F_7, 2026-12-31, 0d
         DRACC data transfer of C57 control 10x Flex : crit, milestone, ADGC6_D_10, 2025-09-30, 0d
@@ -316,31 +310,30 @@
     </div>
   </div>
 
   <!-- Start of ADGC7 Henry Gantt Chart-->
         <a name="ADGC7"></a>
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC7 WUSTL Timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC7  Washington Univ. St Louis - WUSTL [RM1MH138313]
 
         section Grant Year
-        Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, m1, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
         section WUSTL Reporting Year
         End WUSTL Reporting Year 1      :milestone, year1_wustl, 2025-12-31, 0d
         End WUSTL Reporting Year 2      :milestone, m1, 2026-12-31, 0d
 
         click year1_wustl href "https://docs.google.com/spreadsheets/d/1ae4bX4Ful2AWlqzeH_JOo4jFssmEsojd/edit?gid=1888128068#gid=1888128068&range=C2:E27"
 
         section Aim 1
         L0, L1 Data from last quarter submitted, and 3 more lines collected : crit, milestone, ADGC7_E_12, 2025-12-31, 0d
         L0, L1 Data from last quarter submitted, and 4 more lines collected : crit, milestone, ADGC7_F_12, 2026-03-31, 0d
         L2, L3 from prior L0,L1 data submitted : crit, milestone, ADGC7_F_13,  2026-03-31, 0d
         L0, L1 Data from lines 1-2 submitted : crit, milestone, ADGC7_Y2_C_12, 2026-07-01, 0d