e812d974b9e776635398a985fc2c9b96ef477a0e brianlee Tue Jan 27 13:12:50 2026 -0800 Adding a color key, and using 'light blue' = active for milestones with some data, but not all data/metadata diff --git src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html index 62bd0836599..dfb3243b99e 100755 --- src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html +++ src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html @@ -6,30 +6,47 @@ Mermaid Gantt Chart
SSPsyGene Milestone Charts
+ + +
+ 
+    gantt
+    dateFormat  MM
+    axisFormat %U
+    title  Color Key for Milestones
+
+
+    section Examples                           	
+    Grey = completed milestone     : done, milestone, hold1, 2025-03-31, 0d
+    Light blue = active milestone (have data, not all metadata)  : active, milestone, hold2, 2025-4-15, 0d
+    Red = due milestone  : crit, milestone, hold3, 2025-05-31, 0d
+
+
+
ADGC1 UCLA Chart
     gantt
     dateFormat  YYYY-MM-DD
     axisFormat  %Y-Q%q
     title       ADGC1  UCLA  [RM1MH132651]
 
 
     section Grant Year                                                                           
     Start Grant Year 3     : milestone, year3_ucla, 2025-03-31, 0d                                       
     Start Grant Year 4     : milestone, m1, 2026-03-31, 0d                                        
@@ -144,37 +161,37 @@
         axisFormat  %Y-Q%q
         title       ADGC3  Yale [RM1MH132648]
 
         section Grant Year
         Start Grant Year 3     :milestone, year3_yale, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
         click year3_yale href "https://docs.google.com/spreadsheets/d/10xWymZXsDlDQ9uwU5YPAKwyflUMzpDS4/edit?gid=1305684354#gid=1305684354&range=J1:M25"
 
         section Aim 1
         Submit initial data (L0, L1) CRISPRi MEA and calcium imaging of 15 ASD genes in iGLUTs and/or iGABAs (ARID1B - SHANK3) : crit, milestone, ADGC3_N_5, 2027-03-31, 0d
         Submit initial data (L0, L1) CRISPRi ECCITEseq, KOLF2.2J and CW20107 in iGLUTs (fastq), 10 capstone genes (ARID1B - SMARCC2) : crit, milestone, ADGC3_K_6, 2025-09-30, 0d
         Submit initial data (L0, L1) CRISPRi organoid models ECCITEseq of 10 capstone genes (ARID1B - SMARCC2) genes in KOLF2.2J : crit, milestone, ADGC3_N_6, 2027-03-31, 0d
         Submit ECCITEseq data (L0, L1) to DRACC for 29 NDD genes (ANK3 - WAC) in induced NPCs, glutamatergic neurons, and GABAergic neurons; iGLUT 3182-3-clone5 (iNPC, d7 iGLUT and d21 iGLUT) and iGABA 553-3-clone34 (d36 iGABA) : done, milestone, ADGC3_I_7, 2025-03-31, 0d
-        Submit L3/L4 data from iGLUT manuscript : crit, milestone, ADGC3_K_7, 2025-09-30, 0d
+        Submit L3/L4 data from iGLUT manuscript : active, milestone, ADGC3_K_7, 2025-09-30, 0d
 
        
         section Aim 2
         Submit data (L0, L1) High-throughput quantitative behavioral profiling (.raw, .XLS), zebrafish, 10 stable mutant lines (ADNP - SYNGAP1) : crit, milestone, ADGC3_I_12, 2025-03-31, 0d
-        Submit data (L0, L1) High-throughput quantitative behavioral profiling (.raw, .XLS), zebrafish, 20 NPD genes (ANK2 - SMARCC2) : crit, milestone, ADGC3_J_14, 2025-07-01, 0d
-        Submit data (L0, L1) Whole-brain structure and activity mapping (.LIF, .XLS), zebrafish, 5 NPD genes (ADNP - NRXN1) : crit, milestone, ADGC3_K_14, 2025-09-30, 0d
+        Submit data (L0, L1) High-throughput quantitative behavioral profiling (.raw, .XLS), zebrafish, 20 NPD genes (ANK2 - SMARCC2) : active, milestone, ADGC3_J_14, 2025-07-01, 0d
+        Submit data (L0, L1) Whole-brain structure and activity mapping (.LIF, .XLS), zebrafish, 5 NPD genes (ADNP - NRXN1) : active, milestone, ADGC3_K_14, 2025-09-30, 0d
         Submit data (L0, L1) High-throughput quantitative behavioral profiling (.raw, .XLS), zebrafish, 20 NPD genes (AKAP11 - WAC) : crit, milestone, ADGC3_L_14, 2025-12-31, 0d
         Submit data (L0, L1) Whole-brain structure and activity mapping (.LIF, .XLS), zebrafish, 5 NPD genes (PPP2R5D - MBD5) : crit, milestone, ADGC3_M_14, 2026-03-31, 0d
         Submit L3/L4 data from 40 NPD gene manuscript : crit, milestone, ADGC3_K_15, 2025-09-30, 0d
         Submit data (L0, L1) High-throughput quantitative behavioral profiling (.raw, .XLS), zebrafish, 20 NPD genes (CASKIN1 - XPO7) : crit, milestone, ADGC3_N_15, 2027-03-31, 0d
         Submit data (L0, L1) Whole-brain RNA-seq, zebrafish, 10 NPD genes (CHD8 - SMARCC2) : crit, milestone, ADGC3_N_17, 2027-03-31, 0d
 
         section Aim 3
         Submit data (L0, L1) Transcriptomic and epigenomic analysis 5 DBiT RNA-seq, 5 DBiT ATAC-seq, zebrafish CHD8 : crit, milestone, ADGC3_M_22, 2026-03-31, 0d
         Submit data (L0, L1) Transcriptomic and epigenomic analysis 10-20 DBiT RNA-seq and DBiT ATAC-seq profiles, zebrafish 2 TBD genes  : crit, milestone, ADGC3_N_22, 2027-03-31, 0d
         Submit data (L0, L1) CRISPRi organoid transcriptomic and epigenomic analysis 5-10 DBiT RNA-seq profiles and DBiT ATAC-seq profiles, CHD8 : crit, milestone, ADGC3_M_23, 2026-03-31, 0d
         Submit data (L0, L1) CRISPRi organoid transcriptomic and epigenomic analysis 10-20 DBiT RNA-seq and DBiT ATAC-seq, two TBD genes  : crit, milestone, ADGC3_N_23, 2027-03-31, 0d
@@ -197,31 +214,31 @@ click year3_broad href "https://docs.google.com/spreadsheets/d/1BwaO6rgn0o5nTulC2M6dQe5UMGUWEy-o/edit?gid=2037309850#gid=2037309850&range=D1:D16" section Aim 1 Submit 100,000 scRNA-seq profiles per cell type (fastq) of 191 genes in 3 cell types : crit, milestone, ADGC4_Aim1_year4_E_3, 2026-03-31, 0d Submit image dataset of 120 TB (443 genes in 3 cells 5 million profiles) : crit, milestone, ADGC4_Aim1_year4_E_4, 2026-03-31, 0d Submit remaining image datasets : crit, milestone, ADGC4_Aim1_year5_item1, 2027-03-31, 0d section Aim 2 Submit 100,000 scRNA-seq profiles per cell type of 191 genes in 3 cell types (fastq) : crit, milestone, ADGC4_Aim2_year4_E_9, 2026-03-31, 0d Submit 50 TB of calcium imaging and MERFISH data : done, milestone, ADGC4_Aim2_year3_D_11, 2025-03-31, 0d Submit 5 TB of optical electrophysiology data - DATA QUALITY BEING ASSESSED : crit, milestone, ADGC4_Aim2_year3_D_10, 2026-03-31, 0d Submit 5 TB of optical electrophysiology data : crit, milestone, ADGC4_Aim2_year4_E_10, 2026-03-31, 0d Submit remaining optical electrophysiology data : crit, milestone, ADGC4_Aim2_year5_item1, 2027-03-31, 0d section Aim 3 - Submit RNA-seq profiles - ANALYSIS / SUBMISSION UNDERWAY : crit, milestone, ADGC4_Aim3_year3_D_15, 2025-03-31, 0d + Submit RNA-seq profiles - ANALYSIS / SUBMISSION UNDERWAY : active, milestone, ADGC4_Aim3_year3_D_15, 2025-03-31, 0d Submit RNA-seq profiles from >10,000 cells : crit, milestone, ADGC4_Aim3_year4_E_15, 2026-03-31, 0d Submit remaining RNA-seq profiles : crit, milestone, ADGC4_Aim3_year5_item1, 2027-03-31, 0d Submit 10 TB of associated images to DRACC : crit, milestone, ADGC4_Aim3_year4_D_16, 2026-03-31, 0d Submit remaining morphology imaging : crit, milestone, ADGC4_Aim3_year5_item2, 2027-03-31, 0d
ADGC5 Scripps/Broad timeline
         gantt