- On this page you can request a whole-genome alignment between two - genomes that are on the UCSC Genome Browser. - Such alignments can take thousands of compute hours to produce. - The alignment here will be generated on the Galaxy platform, using a - workflow that uses the TACC high performance compute GPU resources. The full - process may take up to a few days. You will receive an email when it is - complete. -
-- Once complete, you will find two new tracks on both assemblies, one with - the full alignment results ("all chains"), and one - track with the best alignment (single coverage) for every basepair, - which can be used for "liftOver". - Since these tracks are single-coverage on the current genome, the - alignments are reciprocal so one is produced per assembly. - For more information on how to download these chain files and use - liftOver, see also: Converting coordinates. - Once these tracks are available, you can also use our Quicklift feature - to lift annotations on-the-fly, as you use the browser, - see also: Quick Lift guide for more information. - -
-If one of the two genomes is not on the UCSC browser yet, please - request it first on our - Assembly Request Page, then come back here when the - assembly has been added to the browser. -
-+ On this page you can request a whole-genome alignment between two + genomes that are on the UCSC Genome Browser. + Such alignments can take thousands of compute hours to produce. + The alignment here will be generated on the Galaxy platform, using a + workflow that uses the TACC high performance compute GPU resources. The full + process may take up to a few days. You will receive an email when it is + complete. +
++ Once complete, you will find two new tracks on both assemblies, one with + the full alignment results ("all chains"), and one + track with the best alignment (single coverage) for every basepair, + which can be used for "liftOver". + Since these tracks are single-coverage on the current genome, the + alignments are reciprocal so one is produced per assembly. + For more information on how to download these chain files and use + liftOver, see also: Converting coordinates. + Once these tracks are available, you can also use our Quicklift feature + to lift annotations on-the-fly, as you use the browser, + see also: Quick Lift guide for more information. + +
+If one of the two genomes is not on the UCSC browser yet, please + request it first on our + Assembly Request Page, then come back here when the + assembly has been added to the browser. +
+