90224975823519f4e4ecc686d523d57d425baacc jcasper Sun Feb 1 01:11:19 2026 -0800 Installing updated hg.conf files from UCSC servers diff --git confs/hgwbeta.hg.conf confs/hgwbeta.hg.conf index a5df2404913..16756c5c05b 100644 --- confs/hgwbeta.hg.conf +++ confs/hgwbeta.hg.conf @@ -228,89 +228,85 @@ # prefix to genark hubs genarkHubPrefix=/gbdb/genark # Related tracks db.relatedTrack=relatedTrack # with wildcard for testing: #httpsCertCheckDomainExceptions=noHardwiredExceptions *.upf.edu *.igh.cnrs.fr *.med.umich.edu # Assembly-specific html (e.g. links to more info) GCA_009914755.4_html=<b><a target=_blank style='font-size:small; position: absolute; margin-left: 1em' href='/goldenPath/newsarch.html#041222'>What is human CHM13-T2T?</a></b> curatedHubPrefix=beta -udc.localDir=/gbdb/ +udc.localDir=/gbdbNotExists # Adding a line to allow for classic theme #browser.theme.classic=theme-floret.css # show a message when hgTracks takes longer than X seconds to load warnSeconds=40 #new G4 key analyticsKey=G-X4EVCTYJ3E # use new mouseovers instead of title tags showMouseovers=on # we trust trackDb to know what tables and files exist on this machine # so we won't check at start up trustTrackDb=on # limit memory to 20G maxMem=21474836480 # Increases the number of items that can be queries from a bigBed file bigBedMaxItems=100000 # Enables the grouping feature for track hubs -#trackHubsCanAddGroups=on +#trackHubsCanAddGroups=off # Enables the pop-up when clicking items option on the configure page #canDoHgcInPopUp=true # hubSpace related settings: # show the hubSpace UI storeUserFiles=true # location of files stored by tusd tusdDataDir=/tusd/beta userDataDir=/tusd/beta # The tusd endpoint files are uploaded to hubSpaceTusdEndpoint=https://hgwbeta-hubspace.gi.ucsc.edu/files # The web accessible location after tusd moves the files # when an upload is completed hubSpaceUrl=https://hgwbeta.soe.ucsc.edu/hubspace # let users create an api key on the hub development tab to use hubSpace from the command line showHubApiKey=true # Increases the number of items that can be queried from a BAM file BAMMaxItems=60000 -# Adding new more aggresive bot delay #35729 -newBotDelay=on - # new flag for testing rm32751 turn on automatic creation of custom tracks from hgBlat results. autoBlatBigPsl=on # BLAT shows locus name of the match #35993 blatShowLocus=off # Enables genark hubs to appear in assembly dropdowns for hgConvert/hgLiftOver genarkLiftOver=on # Enables the gear and x icon for hgTracks -greyBarIcons=on +#greyBarIcons=on # Enables the QuickLift checkbox on hgConvert browser.quickLift=on # Additional settings for QuickLift quickLift.lengthLimit=100000 quickLift.insColor=64,127,0,64 quickLift.delColor=0,0,127,64 quickLift.doubleColor=127,127,127,64 quickLift.mismatchColor=255,0,0,64 # Enables single path loading for bigBed. Also, affects bigGenePred and bigPsl. -bigBedOnePath=on - +#bigBedOnePath=on