Commits for lrnassar

v493_base to v494_preview (2026-01-26 to 2026-02-12) v494

0be1ae24d41681d9d49d8646aa67b53a8ef2f689 Thu Jan 29 16:38:24 2026 -0800

• Updating tests to remove the hub_ underscore that no longer shows up, and fix the order items are returned from these calls, no RM.
  • src/hg/hubApi/tests/expected/test14.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test15.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test16.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/makefile - lines changed 3, context: html, text, full: html, text

7e8bb02d95005ad2ed1232915020fe5c5dca5289 Thu Jan 29 18:05:36 2026 -0800

• Adding linkouts to ENCODE3 cCREs, refs #36966
  • src/hg/makeDb/trackDb/human/hg38/encode.cCREs.override.ra - lines changed 1, context: html, text, full: html, text

65bf003397e55927776facd7654de161ea8c1e20 Fri Jan 30 15:59:33 2026 -0800

• Downloading our major CDNs and changing their references to all be local, there are some more corner cases that were low priority as discussed in the ticket. This work is done to improve performance, expecially for overseas users. Refs #33998
  • src/hg/hgCollection/hgCollection.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgHubConnect/trackHubWizard.c - lines changed 13, context: html, text, full: html, text
  • src/hg/hgSearch/hgSearch.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/mainMain.c - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/fonts/fontawesome-webfont.eot - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/fonts/fontawesome-webfont.svg - lines changed 655, context: html, text, full: html, text
  • src/hg/htdocs/fonts/fontawesome-webfont.ttf - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/fonts/fontawesome-webfont.woff - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/fonts/fontawesome-webfont.woff2 - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/inc/gbPageIncludeStart.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/inc/gbPageStart.html - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/inc/gbPageStartHardcoded.html - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/style/dataTables-1.10.12.min.css - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/dataTables-1.13.6.min.css - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/dataTables-2.2.2.min.css - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/dataTables.buttons-3.2.2.min.css - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/dataTables.select-1.7.0.min.css - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/dataTables.select-3.0.0.min.css - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/jstree-3.3.7.min.css - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/jstree-default/32px.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/style/jstree-default/40px.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/style/jstree-default/throbber.gif - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/style/makefile - lines changed 5, context: html, text, full: html, text
  • src/hg/js/external/bootstrap-3.3.7.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/js/external/dataTables-1.10.12.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/js/external/dataTables-1.13.6.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/js/external/dataTables-2.2.2.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/js/external/dataTables.buttons-3.2.2.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/js/external/dataTables.select-1.7.0.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/js/external/dataTables.select-3.0.0.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/js/external/jstree-3.3.7.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/js/external/makefile - lines changed 8, context: html, text, full: html, text
  • src/hg/js/facetedComposite.js - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/gbHeader.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/jWestHeader.html - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/jsHelper.c - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/tablesTables.c - lines changed 2, context: html, text, full: html, text
  • src/hg/pyLib/hgLib.py - lines changed 6, context: html, text, full: html, text
  • src/hg/pyLib/hgLib3.py - lines changed 6, context: html, text, full: html, text