Commits for max

v493_base to v494_preview (2026-01-26 to 2026-02-12) v494

ce138738e24cb6e84502440b79490c412f6786f8 Tue Jan 27 03:13:16 2026 -0800

• Reapply "changing superTrack TrackUi quite a bit. This reverts commit e6ee88658405177aee46ddb8902ae93aee5b1378.
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 72, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 58, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 4, context: html, text, full: html, text
  • src/hg/js/utils.js - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 47, context: html, text, full: html, text
  • src/inc/cheapcgi.h - lines changed 1, context: html, text, full: html, text
  • src/inc/common.h - lines changed 3, context: html, text, full: html, text
  • src/lib/cheapcgi.c - lines changed 4, context: html, text, full: html, text
  • src/lib/common.c - lines changed 8, context: html, text, full: html, text

5059707121527ccfa37fba0e1bc2617ab15d34b2 Tue Jan 27 08:39:05 2026 -0800

• converting NCBI ALFA to VCF format, necessary for varFreqs merge, refs #36642
  • src/hg/makeDb/doc/hg38/varFreqs.txt - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/scripts/alfa_to_vcf.py - lines changed 309, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 227, context: html, text, full: html, text

13dc32436ac510521c3366ea68973d3ec4940937 Wed Jan 28 04:48:20 2026 -0800

• adding gnomad3 coverage track, refs #37036
  • src/hg/makeDb/doc/hg38/gnomad.txt - lines changed 58, context: html, text, full: html, text
  • src/hg/makeDb/scripts/gnomadCovToBw.py - lines changed 122, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomadCoverage.ra - lines changed 96, context: html, text, full: html, text

7fd4df639618f431e81244f1c0ad911e4dcb0bd5 Wed Jan 28 04:56:31 2026 -0800

• adding Australia Biobank and fixing up NCBI Alfa docs, refs #36642
  • src/hg/makeDb/trackDb/human/varFreqs.html - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 11, context: html, text, full: html, text

408c3224d740fb994ab561553848ea054d1ad4df Wed Jan 28 04:57:41 2026 -0800

• fixing up typos in gnomadCoverage track
  • src/hg/makeDb/trackDb/human/hg38/gnomadCoverage.ra - lines changed 24, context: html, text, full: html, text

ca6e4921ffdc8f3f21c2b7110a9c033ec1ca7721 Thu Jan 29 05:26:03 2026 -0800

• adding australia to varfreqs supertrack, refs #36642
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 1, context: html, text, full: html, text

55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4 Thu Jan 29 05:26:21 2026 -0800

• Revert "Reapply "changing superTrack TrackUi quite a bit." This reverts commit ce138738e24cb6e84502440b79490c412f6786f8.
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 72, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 58, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 4, context: html, text, full: html, text
  • src/hg/js/utils.js - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 47, context: html, text, full: html, text
  • src/inc/cheapcgi.h - lines changed 1, context: html, text, full: html, text
  • src/inc/common.h - lines changed 3, context: html, text, full: html, text
  • src/lib/cheapcgi.c - lines changed 4, context: html, text, full: html, text
  • src/lib/common.c - lines changed 8, context: html, text, full: html, text

6e3a0adb1ba12087bcb0b6ab98f6ff45c10b1171 Thu Jan 29 07:02:16 2026 -0800

• change scaling after user feedback, refs #36981
  • src/hg/makeDb/trackDb/human/hg38/gnomadCoverage.ra - lines changed 13, context: html, text, full: html, text

7094f49ccc894883750c839779223e4039e0bd16 Thu Jan 29 14:58:17 2026 -0800

• adding gnomad coverage track, refs #37036
  • src/hg/makeDb/doc/hg38/gnomad.txt - lines changed 58, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad3Coverage.html - lines changed 109, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad4ExomeCoverage.html - lines changed 108, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomadCoverage.ra - lines changed 123, context: html, text, full: html, text

6413446eff01d749cfd23e206d4d3da059902759 Fri Jan 30 04:49:02 2026 -0800

• fixing a bug in the gnomad converter and track docs update for the varFreqs track, refs #36642
  • src/hg/makeDb/scripts/gnomadCovToBw.py - lines changed 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.html - lines changed 26, context: html, text, full: html, text

d4e7e1a69b17ccebfc8b558f220dd0e1cc3ba1d0 Mon Feb 2 06:14:27 2026 -0800

• removing regeneron data after rejection of request, code review feedback, refs #36978
  • src/hg/makeDb/trackDb/human/varFreqs.html - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 21, context: html, text, full: html, text