4018c2a09105ed50b7a8e16e8dbf279f84ede4aa
brianlee
  Mon Feb 2 11:54:40 2026 -0800
Marking active milestones (data, not all metadata)

diff --git src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
index 2a7082133ca..40cd01f4517 100755
--- src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
+++ src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
@@ -46,31 +46,31 @@
     axisFormat  %Y-Q%q
     title       ADGC1  UCLA  [RM1MH132651]
 
 
     section Grant Year                                                                           
     Start Grant Year 3     : milestone, year3_ucla, 2025-03-31, 0d                                       
     Start Grant Year 4     : milestone, m1, 2026-03-31, 0d                                        
     Start Grant Year 5     : milestone, m1, 2027-03-31, 0d
 
     click year3_ucla href "https://docs.google.com/spreadsheets/d/1Ml_UXDHE4UZo2kjLp1aZLa0KxLtLSnVi/edit?gid=1138387919#gid=1138387919&range=J1:M20"
         
     section AIM 1 
 
     section AIM 2
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from Capstone Lines   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds  : crit, milestone, ADGC1_I_8, 2025-03-31, 0d
-    Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH B   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_JK_8, 2025-09-30, 0d
+    Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH B   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : active, milestone, ADGC1_JK_8, 2025-09-30, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH C   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_LM_8, 2026-03-31, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH D   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_NO_8, 2026-10-01, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH E   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_P_8, 2026-12-31, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH F   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_Q_8, 2027-03-31, 0d
     Submit L0-L1 from BATCH B, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_LM_111213, 2026-03-31, 0d
     Submit L0-L1 from BATCH C, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_NO_111213, 2026-10-01, 0d
     Submit L0-L1 from BATCH D, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_P_111213, 2026-12-31, 0d
     Submit L0-L1 from BATCH E-G, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_Q_111213, 2027-03-31, 0d
     Complete villages - submit L0-L1 to DRACC   : crit, milestone, ADGC1_JK_14, 2025-09-30, 0d
     Village Analysis - submit L0-L1 to DRACC   : crit, milestone, ADGC1_LM_14, 2026-03-31, 0d
     Calcium Imaging Capstone Analysis 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds   : crit, milestone, ADGC1_K_15, 2025-09-30, 0d
     Calcium Imaging analysis excitatory/inhibitory neurons - Capstone Analysis 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds   : crit, milestone, ADGC1_M_15, 2026-03-31, 0d
     Calcium Imaging Experiments and analysis of future batches 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds (Submit L0-L4 to DRACC) : crit, milestone, ADGC1_NOPQ_15, 2027-03-31, 0d
     
     section AIM 3
@@ -103,44 +103,44 @@
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC2  MiNND [RM1MH133065]
 
         section Grant Year
         Start Grant Year 3     :milestone, year3_minnd, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-03-31, 0d
 
         click year3_minnd href "https://docs.google.com/spreadsheets/d/1GNrJaIjs6nPlFY4j2AlZSlTDf2-mi17d/edit?gid=1137576441#gid=1137576441&range=J1:M34"
         
         section Aim 1
 
         section Aim 2
         
-        Submit scRNA-seq data for 72 edited lines (3×23 gene mutations + 1 NTC) from last quarter. : crit, milestone, ADGC2_J_11, 2025-06-30, 0d 
+        Submit scRNA-seq data for 72 edited lines (3×23 gene mutations + 1 NTC) from last quarter. : active, milestone, ADGC2_J_11, 2025-06-30, 0d 
         Submit scRNA-seq data for 72 edited lines (3×23 mutations + 1 NTC) & L1-L3 datasets (fastq, RDS, Excel) from last year. : crit, milestone, ADGC2_K_11, 2025-09-30, 0d
         Submit scRNA-seq data for 72 edited lines (3×23 mutations + 1 NTC) & L1-L3 datasets (fastq, RDS, Excel) from last quarter  : crit, milestone, ADGC2_L_11, 2025-12-31, 0d
         Submit scRNA-seq data for 72 edited lines (3×23 mutations + 1 NTC) & L1-L3 datasets (fastq, RDS, Excel) from last quarter : crit, milestone, ADGC2_M_11, 2026-03-31, 0d
 
-        Submit Imaging of 72 iPSC lines (3×23 mutations + 1 NTC) & prior quarter L1-L3 : crit, milestone, ADGC2_J_12, 2025-06-30, 0d
+        Submit Imaging of 72 iPSC lines (3×23 mutations + 1 NTC) & prior quarter L1-L3 : active, milestone, ADGC2_J_12, 2025-06-30, 0d
         Submit Imaging of 72 iPSC lines (3×23 mutations + 1 NTC) & prior quarter L1-L3 	: crit, milestone, ADGC2_K_12, 2025-09-30, 0d
         Submit Imaging of 72 iPSC lines (3×23 mutations + 1 NTC) & prior quarter L1-L3 : crit, milestone, ADGC2_L_12, 2025-12-31, 0d
         Submit Imaging of 72 iPSC lines (3×23 mutations + 1 NTC) & prior quarter L1-L3 : crit, milestone, ADGC2_M_12, 2026-03-31, 0d
         CODEX 3x data to BIL, generate LoF variants in 1-2 new lines : crit, milestone, ADGC2_M_13, 2026-03-31, 0d
 
         section Aim 3
 
-        Submit Synaptic Optical Imaging of 72 iPSC (3×23 mutations + 1 NTC) : crit, milestone, ADGC2_J_19, 2025-06-30, 0d
+        Submit Synaptic Optical Imaging of 72 iPSC (3×23 mutations + 1 NTC) : active, milestone, ADGC2_J_19, 2025-06-30, 0d
         Submit Synaptic Optical Imaging of 72 iPSC (3×23 mutations + 1 NTC) : crit, milestone, ADGC2_K_19, 2025-09-30, 0d
         Begin to upload L1-L3 analysis for data from previous year : crit, milestone, ADGC2_K_20, 2025-09-30, 0d
         Submit Synaptic Optical Imaging of 72 iPSC (3×23 mutations + 1 NTC) : crit, milestone, ADGC2_L_19, 2025-12-31, 0d
         Continue upload L1-L3 analysis for data from previous year : crit, milestone, ADGC2_L_20, 2025-12-31, 0d
         Submit Synaptic Optical Imaging of 72 iPSC (3×23 mutations + 1 NTC) : crit, milestone, ADGC2_M_19, 2026-03-31, 0d
         Continue upload L1-L3 analysis for data from previous year : crit, milestone, ADGC2_M_20, 2026-03-31, 0d
         
         section Aim4
         
         Submit PatchSeq data for 192 NTC lines L0 data : crit, milestone, ADGC2_J_27, 2025-06-30, 0d
         Submit PatchSeq data for 192 NTC lines L0 data : crit, milestone, ADGC2_K_27, 2025-09-30, 0d
         Submit PatchSeq data for 192 NTC lines L0 data : crit, milestone, ADGC2_L_27, 2025-12-31, 0d
         Submit PatchSeq data for 192 NTC lines L0 data : crit, milestone, ADGC2_M_27, 2026-03-31, 0d
         Submit PatchSeq data for 192 cells L1-L3 : crit, milestone, ADGC2_K_28, 2025-09-30, 0d
         Submit PatchSeq data for 192 cells L1-L3 : crit, milestone, ADGC2_L_28, 2025-12-31, 0d