a0c54bf7aecca671af8fa6063e129e7524302ca3 gperez2 Tue Feb 3 09:23:29 2026 -0800 Code review edits, refs #37054 diff --git src/hg/makeDb/trackDb/recount3.html src/hg/makeDb/trackDb/recount3.html index 312fd8b03af..acf9f49271c 100644 --- src/hg/makeDb/trackDb/recount3.html +++ src/hg/makeDb/trackDb/recount3.html @@ -41,31 +41,30 @@ <p> Introns can be filtered by: </p> <ul> <li><b>Intron size</b> - Length of the intron. The default range is 30 to 100,000 bases.</li> <li><b>Split read count</b> - Number of split reads supporting the intron. The default is a minimum of 10,000 reads.</li> <li><b>Splice junction motif</b> - The motif is specified in the form <em>GT/AG</em>, with canonical motifs in uppercase and unknown motifs in lowercase. The default is no filtering.</li> <li><b>Strand</b> - Filter by positive strand ('+'), negative strand ('-'), and/or unknown strand ('.'). The default is no strand filtering ('all'). </li> </ul> -</p> <h2>Methods</h2> <p> A distributed processing system for RNA-seq data called Monorail was developed. Using Monorail, recount3 processed and summarized 316,443 human and 416,803 mouse RNA-seq run accessions collected from the Sequence Read Archive (SRA), with the human runs including large-scale consortia such as GTEx v8 and The Cancer Genome Atlas (TCGA). </p> <p> Junction files were converted to BED format. For grayscaling total read count was log10 transformed and multiplied by 10 to get a score between 0 and 225, which can be found in the BED score field. </p> <h2>Data Access</h2>