5ef143858259d0bbb520098e036beb585d4285fc
jcasper
  Sun Feb 8 01:11:19 2026 -0800
Installing updated hg.conf files from UCSC servers

diff --git confs/rr.hg.conf confs/rr.hg.conf
index 60ab0e4873a..d1873adc345 100644
--- confs/rr.hg.conf
+++ confs/rr.hg.conf
@@ -174,97 +174,79 @@
 
 # HTTPS Certificate Check Settings are: abort warn log none
 httpsCertCheck=log
 
 # domains to whitelist, skip cert checking, space-separated list
 # presence of "noHardwiredExceptions" in the list here 
 # turns off the hardwired whitelist exceptions in https.c
 httpsCertCheckDomainExceptions=
 
 # with wildcard for testing:
 #httpsCertCheckDomainExceptions=noHardwiredExceptions *.upf.edu *.igh.cnrs.fr *.med.umich.edu
 
 # Assembly-specific html (e.g. links to more info)
 GCA_009914755.4_html=<b><a target=_blank style='font-size:small; position: absolute; margin-left: 1em' href='/goldenPath/newsarch.html#041222'>What is human CHM13-T2T?</a></b>
 
-# Adding parallel loading on files from /gbdb, refs #29819
-udc.localDir=/gbdb
-
 # Adding curated hubs line by request from Jairo 09/26/22
 curatedHubPrefix=public
 
 # show a message when hgTracks takes longer than X seconds to load
 warnSeconds=40
 
 # new GA4 key
 analyticsKey=G-P5EV0BL192
 
 #signalsHandler=off
 
 # use new mouseovers instead of title tags
 showMouseovers=on
 
 # we trust trackDb to know what tables and files exist on this machine
 # so we won't check at start up
 trustTrackDb=on
 
 # limit memory to 20G
 maxMem=21474836480
 
 # Increases the number of items that can be queried from a bigBed file
 bigBedMaxItems=100000
 
-# Enables the pop-up when clicking items option on the configure page
-canDoHgcInPopUp=true
-
-# Enables the grouping feature for track hubs
-trackHubsCanAddGroups=on
-
-# Adding more aggressive bot delay #35729
-newBotDelay=on
-
 # Increases the number of items that can be queried from a BAM file
 BAMMaxItems=30000
 
 ## hubSpace related settings:
 ## show the hubSpace UI
 storeUserFiles=true
 ## location of files stored by tusd
 tusdDataDir=/data/tusd/data
 ## The tusd endpoint files are uploaded to
 hubSpaceTusdEndpoint=https://hubspace.soe.ucsc.edu/files
 ## The web accessible location after tusd moves the files
 ## when an upload is completed
 hubSpaceUrl=https://genome.ucsc.edu/hubspace
 ## let users create an api key on the hub development tab to use hubSpace from the command line
 showHubApiKey=true
 ## if tusd is running on a different server and is mounted locally,
 ## rewrite the tusdDataDir value
 ## with the tusdMountPoint value to check files exist
 tusdMountPoint=/hubspace
 
 # BLAT shows locus name of the match #35993
 blatShowLocus=off
 
 # new flag for testing rm32751 turn on automatic creation of custom tracks from hgBlat results.
 autoBlatBigPsl=on
 
-# Enables the gear and x icon for hgTracks
-greyBarIcons=on
-
 # Enables genark hubs to appear in assembly dropdowns for hgConvert/hgLiftOver
 genarkLiftOver=on
 
 # Enables approved hgLogin redirect
 login.approvedReturn=https://genome.ucsc.edu/,https://genome-euro.ucsc.edu/,https://genome-asia.ucsc.edu/
 
 # Enables the QuickLift checkbox on hgConvert
 browser.quickLift=on
 # Additional settings for QuickLift
 quickLift.lengthLimit=100000
 quickLift.insColor=64,127,0,64
 quickLift.delColor=0,0,127,64
 quickLift.doubleColor=127,127,127,64
 quickLift.mismatchColor=255,0,0,64
-
-# Enables single path loading for bigBed. Also, affects bigGenePred and bigPsl.
-bigBedOnePath=on