7ef879fbbd36899c1f4107701d0e2be658344c0b lrnassar Wed Feb 4 16:35:54 2026 -0800 Staging the JASPAR 2026 track update, refs #36264 diff --git src/hg/makeDb/trackDb/jaspar.ra src/hg/makeDb/trackDb/jaspar.ra index 30644dcfa65..1cc5e7d7669 100644 --- src/hg/makeDb/trackDb/jaspar.ra +++ src/hg/makeDb/trackDb/jaspar.ra @@ -5,34 +5,49 @@ group regulation visibility hide type bigBed 6 . url http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all urlLabel View on JASPAR: filter.score 400 filterByRange.score 0:1000 #maxItems 100000 maxWindowCoverage 15000 exonArrows on spectrum on noParentConfig on showCfg on tableBrowser tbNoGenome noGenomeReason JASPAR files contain billions of items. The Table Browser allows regional queries for this track, but those may timeout if the regions are too big. See the Data Access section in the track description page for other ways to query this data, such as command-line tools and our API. +pennantIcon Updated red ../goldenPath/newsarch.html#NNNNNN "Updated NNN" - track jaspar2024 + track jaspar2026 parent jaspar on priority 1 + shortLabel JASPAR 2026 TFBS + longLabel JASPAR CORE 2026 - Predicted Transcription Factor Binding Sites + type bigBed 6 + + labelFields TFName + visibility pack + bigDataUrl /gbdb/$D/jaspar/JASPAR2026.bb + maxItems 100000 + filter.score 400 + filterByRange.score 0:1000 + filterValues.TFName 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,ZIC1,Zic1::Zic2,Zic2,Zic3,ZIC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN4,ZKSCAN5,ZNF121,ZNF131,ZNF134,ZNF135,ZNF136,ZNF140,ZNF142,ZNF143,ZNF146,ZNF148,ZNF157,ZNF16,ZNF175,ZNF18,ZNF184,ZNF189,ZNF20,ZNF211,ZNF213,ZNF214,ZNF215,ZNF226,ZNF234,ZNF24,ZNF250,ZNF251,ZNF257,ZNF260,ZNF263,ZNF274,ZNF275,ZNF281,ZNF282,ZNF286B,ZNF317,ZNF320,ZNF322,ZNF324,ZNF331,ZNF335,ZNF341,ZNF343,ZNF347,ZNF35,ZNF354A,ZNF354C,ZNF362,ZNF367,ZNF382,ZNF384,ZNF395,ZNF407,ZNF410,ZNF416,ZNF417,ZNF418,ZNF423,ZNF43,ZNF436,ZNF449,ZNF454,ZNF460,ZNF470,ZNF471,ZNF490,ZNF493,ZNF497,ZNF500,ZNF510,ZNF518B,ZNF524,ZNF528,ZNF530,ZNF536,ZNF547,ZNF549,ZNF551,ZNF558,ZNF568,ZNF57,ZNF574,ZNF582,ZNF596,ZNF606,ZNF610,ZNF623,ZNF648,ZNF652,ZNF66,ZNF667,ZNF669,ZNF672,ZNF675,ZNF676,ZNF677,ZNF678,ZNF680,ZNF682,ZNF683,ZNF684,ZNF689,ZNF692,ZNF696,ZNF699,ZNF70,ZNF700,ZNF701,ZNF707,ZNF708,ZNF721,ZNF724,ZNF726,ZNF728,ZNF732,ZNF740,ZNF746,ZNF75A,ZNF75D,ZNF76,ZNF766,ZNF768,ZNF770,ZNF772,ZNF773,ZNF775,ZNF780B,ZNF784,ZNF8,ZNF800,ZNF814,ZNF816,ZNF827,ZNF831,ZNF836,ZNF841,ZNF85,ZNF850,ZNF853,ZNF865,ZNF878,ZNF93,ZSCAN16,ZSCAN2,ZSCAN21,ZSCAN25,ZSCAN29,ZSCAN31,ZSCAN4,ZXDA,ZXDB,ZXDC + + track jaspar2024 + parent jaspar off + priority 1.5 shortLabel JASPAR 2024 TFBS longLabel JASPAR CORE 2024 - Predicted Transcription Factor Binding Sites type bigBed 6 + labelFields TFName visibility pack bigDataUrl /gbdb/$D/jaspar/JASPAR2024.bb motifPwmTable hgFixed.jasparCore2024 maxItems 100000 filter.score 400 filterByRange.score 0:1000 filterValues.TFName Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,ASCL1,Ascl2,Atf1,ATF2,Atf3,ATF3,ATF4,ATF6,ATF7,Atoh1,Atoh1,ATOH7,BACH1,Bach1::Mafk,BACH2,BACH2,BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,BCL11A,Bcl11B,BCL6,BCL6B,Bhlha15,BHLHA15,BHLHE22,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BNC2,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CEBPG,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,CREB3L4,Creb5,CREM,Crx,CTCF,CTCF,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,DLX1,Dlx2,Dlx3,Dlx4,Dlx5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA1,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,Ebf4,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,Elf5,ELK1,ELK1::HOXA1,ELK1::HOXB13,ELK1::SREBF2,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,EPAS1,ERF,ERF::FIGLA,ERF::FOXI1,ERF::FOXO1,ERF::HOXB13,ERF::NHLH1,ERF::SREBF2,Erg,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV2::DRGX,ETV2::FIGLA,ETV2::FOXI1,ETV2::HOXB13,ETV3,ETV4,ETV5,ETV5::DRGX,ETV5::FIGLA,ETV5::FOXI1,ETV5::FOXO1,ETV5::HOXA2,ETV6,ETV7,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FEZF2,FIGLA,FLI1,FLI1::DRGX,FLI1::FOXI1,FOS,FOS,FOSB::JUN,FOSB::JUNB,FOSB::JUNB,FOS::JUN,FOS::JUN,FOS::JUNB,FOS::JUND,FOSL1,FOSL1::JUN,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL1::JUND,FOSL2,FOSL2::JUN,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUNB,FOSL2::JUND,FOSL2::JUND,FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,FOXD3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,FOXJ2::ELF1,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,Foxn1,FOXN3,Foxo1,FOXO1::ELF1,FOXO1::ELK1,FOXO1::ELK3,FOXO1::FLI1,Foxo3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,FOXP4,Foxq1,FOXS1,GABPA,GATA1,GATA1::TAL1,GATA2,Gata3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1B,Gli1,Gli2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HMBOX1,Hmga1,Hmx1,Hmx2,Hmx3,Hnf1A,HNF1A,HNF1B,HNF4A,HNF4A,HNF4G,HOXA1,HOXA10,Hoxa11,Hoxa13,HOXA2,HOXA3,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB1,HOXB13,HOXB2,HOXB2::ELK1,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD12::ELK1,Hoxd13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,IKZF2,Ikzf3,INSM1,Irf1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,JDP2,Jun,JUN,JUNB,JUNB,JUND,JUND,JUN::JUNB,JUN::JUNB,KLF1,KLF10,KLF11,KLF12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF7,KLF9,LBX1,LBX2,Lef1,Lhx1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,Mafg,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS1,MEIS2,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MGA::EVX1,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,Msgn1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,Nanog,NEUROD1,Neurod2,Neurod2,NEUROG1,NEUROG2,NEUROG2,Nfat5,Nfatc1,Nfatc2,NFATC3,NFATC4,NFE2,Nfe2l2,NFIA,NFIB,NFIC,NFIC,NFIC::TLX1,NFIL3,NFIX,NFIX,NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,Nkx2-1,NKX2-2,NKX2-3,NKX2-4,NKX2-5,NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,Npas4,NR1D1,NR1D2,Nr1H2,NR1H2::RXRA,Nr1h3,Nr1h3::Rxra,Nr1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F1,NR2F1,NR2F2,Nr2f6,Nr2F6,NR2F6,NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5A2,NR6A1,Nrf1,NRL,OLIG1,Olig2,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PATZ1,PAX1,PAX2,PAX3,PAX3,PAX4,PAX5,PAX6,Pax7,PAX8,PAX9,PBX1,PBX2,PBX3,PDX1,Pgr,PGR,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F1::SOX2,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F1,POU6F2,Ppara,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm14,Prdm15,Prdm4,Prdm5,PRDM9,PROP1,PROX1,PRRX1,PRRX2,Ptf1A,Ptf1A,Ptf1A,RARA,RARA,RARA::RXRA,RARA::RXRG,Rarb,Rarb,RARB,Rarg,Rarg,RARG,RAX,RAX2,RBPJ,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,Rfx6,RFX7,Rhox11,RHOXF1,RORA,RORA,RORB,RORC,RREB1,Runx1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRB,RXRG,RXRG,SATB1,SCRT1,SCRT2,SHOX,Shox2,SIX1,SIX2,Six3,Six4,SMAD2,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,Sox7,SOX8,SOX9,SP1,SP2,SP3,SP4,SP5,SP8,SP9,SPDEF,Spi1,SPIB,SPIC,Spz1,SREBF1,SREBF1,SREBF2,SREBF2,SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,Tbx6,TBXT,Tcf12,TCF12,Tcf21,TCF21,TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2A,TFAP2A,TFAP2B,TFAP2B,TFAP2B,TFAP2C,TFAP2C,TFAP2C,TFAP2E,TFAP4,TFAP4,TFAP4::ETV1,TFAP4::FLI1,TFCP2,Tfcp2l1,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,Thap11,THRA,THRB,THRB,THRB,TLX2,TP53,TP63,TP73,TRPS1,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,Vdr,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,Yy1,YY2,ZBED1,ZBED2,ZBED4,ZBTB11,ZBTB12,ZBTB14,ZBTB17,ZBTB18,Zbtb2,ZBTB24,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP14,Zfp335,ZFP42,ZFP57,Zfp809,Zfp961,Zfx,ZIC1,Zic1::Zic2,Zic2,Zic3,ZIC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF157,ZNF16,ZNF175,ZNF184,ZNF189,ZNF211,ZNF213,ZNF214,ZNF24,ZNF257,ZNF263,ZNF274,ZNF281,ZNF282,ZNF317,ZNF320,ZNF324,ZNF331,ZNF341,ZNF343,ZNF35,ZNF354A,ZNF354C,ZNF382,ZNF384,ZNF410,ZNF416,ZNF417,ZNF418,Znf423,ZNF449,ZNF454,ZNF460,ZNF524,ZNF528,ZNF530,ZNF547,ZNF549,ZNF558,ZNF574,ZNF582,ZNF610,ZNF652,ZNF667,ZNF669,ZNF675,ZNF677,ZNF680,ZNF682,ZNF684,ZNF692,ZNF701,ZNF707,ZNF708,ZNF740,ZNF75A,ZNF75D,ZNF76,ZNF766,ZNF768,ZNF770,ZNF784,ZNF8,ZNF816,ZNF85,ZNF93,ZSCAN16,ZSCAN21,ZSCAN29,ZSCAN31,ZSCAN4 track jaspar2022 parent jaspar off shortLabel JASPAR 2022 TFBS