60410f74b7cbc4fbad91bcdbe4e0276e44d936ee
lrnassar
  Fri Feb 6 09:51:04 2026 -0800
Tweaks to the methylation atlas track based on author feedback, refs #36826

diff --git src/hg/makeDb/trackDb/human/humanMethylationAtlas.ra src/hg/makeDb/trackDb/human/humanMethylationAtlas.ra
index a503656c61e..bdbaf8efd12 100755
--- src/hg/makeDb/trackDb/human/humanMethylationAtlas.ra
+++ src/hg/makeDb/trackDb/human/humanMethylationAtlas.ra
@@ -1,49 +1,49 @@
 track humanMethylationAtlasSummary
 priority 1
 parent dnaMethylation
 shortLabel Human Methylation Atlas Summary
 longLabel Human Methylation Atlas summary regions and enhancers
 visibility pack
 compositeTrack on
 type bigBed 4 .
 dataVersion Data release version 2
 showCfg on
 html humanMethylationAtlas.html
 
 track hmaSummaryUnmethylated
 priority 1
 type bigBed 9 .
 itemRgb on
 shortLabel Unmethylated regions
 longLabel All unmethylated regions
 parent humanMethylationAtlasSummary on
 bigDataUrl /gbdb/$D/dnaMethylationAtlas/hmaSummaryUnmethylated.bb
-visibility pack
+visibility dense
 filterLabel.name Cell/Tissue Type
 filterValues.name Adipocytes,Bladder-Ep,Blood-B,Blood-Granul,Blood-Mono+Macro,Blood-NK,Blood-T,Bone-Osteob,Breast-Basal-Ep,Breast-Luminal-Ep,Colon-Ep,Colon-Fibro,Dermal-Fibro,Endothel,Epid-Kerat,Eryth-prog,Fallopian-Ep,Gallbladder,Gastric-Ep,Head-Neck-Ep,Heart-Cardio,Heart-Fibro,Kidney-Ep,Liver-Hep,Lung-Ep-Alveo,Lung-Ep-Bron,Neuron,Oligodend,Ovary-Ep,Pancreas-Acinar,Pancreas-Alpha,Pancreas-Beta,Pancreas-Delta,Pancreas-Duct,Prostate-Ep,Skeletal-Musc,Small-Int-Ep,Smooth-Musc,Thyroid-Ep
 
 track hmaSummaryPutEnhancers
 priority 2
 type bigBed 9 .
 itemRgb on
 shortLabel Putative enhancers
 longLabel Putative enhancers from unmethylated regions
 parent humanMethylationAtlasSummary on
 bigDataUrl /gbdb/$D/dnaMethylationAtlas/hmaSummaryPutEnhancers.bb
-visibility pack
+visibility dense
 filterLabel.name Cell/Tissue Type
 filterValues.name Bladder-Ep,Blood-B,Blood-Granul,Blood-Mono+Macro,Blood-NK,Blood-T,Breast-Basal-Ep,Breast-Luminal-Ep,Colon-Ep,Colon-Fibro,Dermal-Fibro,Endothel,Epid-Kerat,Gastric-Ep,Head-Neck-Ep,Heart-Cardio,Heart-Fibro,Kidney-Ep,Liver-Hep,Lung-Ep-Alveo,Lung-Ep-Bron,Neuron,Oligodend,Pancreas-Acinar,Pancreas-Alpha,Pancreas-Beta,Pancreas-Delta,Pancreas-Duct,Prostate-Ep,Skeletal-Musc,Small-Int-Ep,Thyroid-Ep
 
 track hmaSummaryU250
 priority 3
 type bigBed 9 .
 itemRgb on
 shortLabel Top 250 U markers per cell type
 longLabel Top 250 unmethylated regions specific to each cell type
 parent humanMethylationAtlasSummary on
 bigDataUrl /gbdb/$D/dnaMethylationAtlas/hmaSummaryU250.bb
-visibility pack
+visibility dense
 filterLabel.name Cell/Tissue Type
 filterValues.name Adipocytes,Bladder-Ep,Blood-B,Blood-Granul,Blood-Mono+Macro,Blood-NK,Blood-T,Bone-Osteob,Breast-Basal-Ep,Breast-Basal-Ep:Breast-Luminal-Ep,Breast-Luminal-Ep,Colon-Ep,Colon-Ep:Gastric-Ep:Small-Int-Ep,Colon-Ep:Small-Int-Ep,Colon-Fibro,Colon-Fibro:Heart-Fibro,Dermal-Fibro,Endothel,Epid-Kerat,Eryth-prog,Fallopian-Ep,Fallopian-Ep:Ovary-Ep,Gallbladder,Gastric-Ep,Gastric-Ep:Small-Int-Ep,Head-Neck-Ep,Heart-Cardio,Heart-Cardio:Heart-Fibro,Heart-Cardio:Skeletal-Musc:Smooth-Musc,Heart-Fibro,Kidney-Ep,Liver-Hep,Lung-Ep-Alveo,Lung-Ep-Alveo:Lung-Ep-Bron,Lung-Ep-Bron,Neuron,Neuron:Oligodend,Oligodend,Ovary-Ep,Pancreas-Acinar,Pancreas-Alpha,Pancreas-Alpha:Pancreas-Beta:Pancreas-Delta,Pancreas-Beta,Pancreas-Delta,Pancreas-Duct,Prostate-Ep,Skeletal-Musc,Skeletal-Musc:Smooth-Musc,Small-Int-Ep,Smooth-Musc,Thyroid-Ep
 
 include methylationAtlasSignals.ra