src/hg/hgIntegrator/hgIntegrator.c 16eee40c920d259c10ee345472708d0cc0cc3393

16eee40c920d259c10ee345472708d0cc0cc3393
chmalee
  Tue Mar 3 11:25:23 2026 -0800
Adds an hg.conf defined 'popular' species list to the new search bar as a 'default' list of results upon focus of the search bar. Combines with 'recents' list. Add a chevron next to the search bar so users know the autocomplete has some default options, refs #36232

diff --git src/hg/hgIntegrator/hgIntegrator.c src/hg/hgIntegrator/hgIntegrator.c
index 2276bfd5cb6..6eee46f4754 100644
--- src/hg/hgIntegrator/hgIntegrator.c
+++ src/hg/hgIntegrator/hgIntegrator.c
@@ -25,30 +25,31 @@
 #include "hdb.h"
 #include "hgColors.h"
 #include "hui.h"
 #include "joiner.h"
 #include "jsHelper.h"
 #include "jsonParse.h"
 #include "knetUdc.h"
 #include "textOut.h"
 #include "trackHub.h"
 #include "userRegions.h"
 #include "web.h"
 #include "annoFormatTab.h"
 #include "annoGratorQuery.h"
 #include "windowsToAscii.h"
 #include "chromAlias.h"
+#include "hgConfig.h"
 
 /* Global Variables */
 struct cart *cart = NULL;             /* CGI and other variables */
 struct hash *oldVars = NULL;          /* Old contents of cart before it was updated by CGI */
 
 #define QUERY_SPEC "hgi_querySpec"
 #define UI_CHOICES "hgi_uiChoices"
 #define DO_QUERY "hgi_doQuery"
 
 #define hgiRegionType "hgi_range"
 #define hgiRegionTypePosition "position"
 #define hgiRegionTypeDefault hgiRegionTypePosition
 
 static void writeCartVar(struct cartJson *cj, char *varName)
 {
@@ -920,48 +921,74 @@
 
 void doMainPage()
 /* Send HTML with javascript to bootstrap the user interface. */
 {
 char *db = NULL, *genome = NULL, *clade = NULL;
 getDbGenomeClade(cart, &db, &genome, &clade, oldVars);
 chromAliasSetup(db);
 char *position = windowsToAscii(cartUsualString(cart, "position", hDefaultPos(db)));
 cartSetLastPosition(cart, position, oldVars);
 initGenbankTableNames(db);
 webStartWrapperDetailedNoArgs(cart, trackHubSkipHubName(db),
                               "", "Data Integrator",
                               TRUE, FALSE, TRUE, TRUE);
 
 // Ideally these would go in the <HEAD>
-puts("<link rel=\"stylesheet\" href=\"//code.jquery.com/ui/1.10.3/themes/smoothness/jquery-ui.css\">");
+webIncludeResourceFile("jquery-ui.css");
 puts("<link rel=\"stylesheet\" href=\"//netdna.bootstrapcdn.com/font-awesome/4.0.3/css/font-awesome.css\">");
 
 puts("<div id=\"appContainer\">Loading...</div>");
 
 // Set a global JS variable hgsid.
 // Plain old "var ..." doesn't work (other scripts can't see it), it has to belong to window.
 char javascript[1024];
 safef(javascript, sizeof javascript,
     "window.%s='%s';\n", cartSessionVarName(), cartSessionId(cart));
 // jsInline(javascript);  // GALT TODO would prefer inline, but lack of global early causes issues.
 printf("<script type='text/javascript' nonce='%s'>\n%s</script>\n", getNonce(), javascript);
 
 jsIncludeReactLibs();
 jsIncludeFile("reactHgIntegrator.js", NULL);
 jsIncludeFile("hgIntegratorModel.js", NULL);
 jsIncludeFile("autocompleteCat.js", NULL);
 
+// Embed popular assemblies JSON for the autocomplete dropdown
+{
+char *popularStr = cfgOptionDefault("browser.popularGenomes",
+    "hg38,hg19,mm39,mm10,rn7,danRer11,dm6,ce11,sacCer3");
+struct slName *dbNames = slNameListFromComma(popularStr);
+struct dyString *json = dyStringNew(512);
+dyStringAppendC(json, '[');
+boolean first = TRUE;
+struct slName *dbIter;
+for (dbIter = dbNames; dbIter != NULL; dbIter = dbIter->next)
+    {
+    struct dbDb *info = hDbDb(dbIter->name);
+    if (info == NULL || !info->active)
+        continue;
+    if (!first)
+        dyStringAppendC(json, ',');
+    first = FALSE;
+    dyStringPrintf(json, "{\"db\":\"%s\",\"label\":\"%s - %s (%s)\",\"commonName\":\"%s\"}",
+        info->name, info->organism, info->description, info->name, info->organism);
+    }
+dyStringAppendC(json, ']');
+printf("<script type='application/json' id='speciesSearchInputPopularData'>%s</script>\n", dyStringContents(json));
+dyStringFree(&json);
+slFreeList(&dbNames);
+}
+
 // Invisible form for submitting a query
 printf("\n<form action=\"%s\" method=%s id='queryForm'>\n",
        hgIntegratorName(), cartUsualString(cart, "formMethod", "POST"));
 cartSaveSession(cart);
 cgiMakeHiddenVar(QUERY_SPEC, cartUsualString(cart, QUERY_SPEC, ""));
 cgiMakeHiddenVar(DO_QUERY, "go");
 puts("</form>");
 
 // Invisible form for jumping to another CGI
 printf("\n<form method=%s id='jumpForm'>\n", cartUsualString(cart, "formMethod", "GET"));
 cartSaveSession(cart);
 puts("</form>");
 
 webEnd();
 }