a120735fd0e3914968ffd26170946de5ab960135
gperez2
  Sat Mar 7 16:28:02 2026 -0800
Reorganizing trackDb, updating name for files, updating shortLabels, updating the Human Methylation Atlas Summary and Human Methylation Atlas Signals track description pages, refs #36826

diff --git src/hg/makeDb/trackDb/human/methylationAtlas.ra src/hg/makeDb/trackDb/human/methylationAtlas.ra
new file mode 100755
index 00000000000..9e12df28a58
--- /dev/null
+++ src/hg/makeDb/trackDb/human/methylationAtlas.ra
@@ -0,0 +1,47 @@
+track humanMethylationAtlasSummary
+priority 1
+parent dnaMethylation
+shortLabel Human Methylation Atlas Summary
+longLabel Human Methylation Atlas summary regions and enhancers
+visibility pack
+compositeTrack on
+type bigBed 4 .
+dataVersion Data release version 2
+showCfg on
+html methylationAtlas.html
+
+        track hmaSummaryUnmethylated
+        priority 1
+        type bigBed 9 .
+        itemRgb on
+        shortLabel All Unmeth Regions
+        longLabel All unmethylated regions
+        parent humanMethylationAtlasSummary on
+        bigDataUrl /gbdb/$D/dnaMethylationAtlas/hmaSummaryUnmethylated.bb
+        visibility dense
+        filterLabel.name Cell/Tissue Type
+        filterValues.name Adipocytes,Bladder-Ep,Blood-B,Blood-Granul,Blood-Mono+Macro,Blood-NK,Blood-T,Bone-Osteob,Breast-Basal-Ep,Breast-Luminal-Ep,Colon-Ep,Colon-Fibro,Dermal-Fibro,Endothel,Epid-Kerat,Eryth-prog,Fallopian-Ep,Gallbladder,Gastric-Ep,Head-Neck-Ep,Heart-Cardio,Heart-Fibro,Kidney-Ep,Liver-Hep,Lung-Ep-Alveo,Lung-Ep-Bron,Neuron,Oligodend,Ovary-Ep,Pancreas-Acinar,Pancreas-Alpha,Pancreas-Beta,Pancreas-Delta,Pancreas-Duct,Prostate-Ep,Skeletal-Musc,Small-Int-Ep,Smooth-Musc,Thyroid-Ep
+        
+        track hmaSummaryPutEnhancers
+        priority 2
+        type bigBed 9 .
+        itemRgb on
+        shortLabel Putative Enhancers
+        longLabel Putative enhancers from unmethylated regions
+        parent humanMethylationAtlasSummary on
+        bigDataUrl /gbdb/$D/dnaMethylationAtlas/hmaSummaryPutEnhancers.bb
+        visibility dense
+        filterLabel.name Cell/Tissue Type
+        filterValues.name Bladder-Ep,Blood-B,Blood-Granul,Blood-Mono+Macro,Blood-NK,Blood-T,Breast-Basal-Ep,Breast-Luminal-Ep,Colon-Ep,Colon-Fibro,Dermal-Fibro,Endothel,Epid-Kerat,Gastric-Ep,Head-Neck-Ep,Heart-Cardio,Heart-Fibro,Kidney-Ep,Liver-Hep,Lung-Ep-Alveo,Lung-Ep-Bron,Neuron,Oligodend,Pancreas-Acinar,Pancreas-Alpha,Pancreas-Beta,Pancreas-Delta,Pancreas-Duct,Prostate-Ep,Skeletal-Musc,Small-Int-Ep,Thyroid-Ep
+        
+        track hmaSummaryU250
+        priority 3
+        type bigBed 9 .
+        itemRgb on
+        shortLabel Top 250 UMRs/Cell
+        longLabel Top 250 unmethylated regions specific to each cell type
+        parent humanMethylationAtlasSummary on
+        bigDataUrl /gbdb/$D/dnaMethylationAtlas/hmaSummaryU250.bb
+        visibility dense
+        filterLabel.name Cell/Tissue Type
+        filterValues.name Adipocytes,Bladder-Ep,Blood-B,Blood-Granul,Blood-Mono+Macro,Blood-NK,Blood-T,Bone-Osteob,Breast-Basal-Ep,Breast-Basal-Ep:Breast-Luminal-Ep,Breast-Luminal-Ep,Colon-Ep,Colon-Ep:Gastric-Ep:Small-Int-Ep,Colon-Ep:Small-Int-Ep,Colon-Fibro,Colon-Fibro:Heart-Fibro,Dermal-Fibro,Endothel,Epid-Kerat,Eryth-prog,Fallopian-Ep,Fallopian-Ep:Ovary-Ep,Gallbladder,Gastric-Ep,Gastric-Ep:Small-Int-Ep,Head-Neck-Ep,Heart-Cardio,Heart-Cardio:Heart-Fibro,Heart-Cardio:Skeletal-Musc:Smooth-Musc,Heart-Fibro,Kidney-Ep,Liver-Hep,Lung-Ep-Alveo,Lung-Ep-Alveo:Lung-Ep-Bron,Lung-Ep-Bron,Neuron,Neuron:Oligodend,Oligodend,Ovary-Ep,Pancreas-Acinar,Pancreas-Alpha,Pancreas-Alpha:Pancreas-Beta:Pancreas-Delta,Pancreas-Beta,Pancreas-Delta,Pancreas-Duct,Prostate-Ep,Skeletal-Musc,Skeletal-Musc:Smooth-Musc,Small-Int-Ep,Smooth-Musc,Thyroid-Ep