Commits for lrnassar

v495_preview2 to v495_base (2026-03-02 to 2026-03-09) v495

244f263edff6b7cd99b09b170c722b0d04a12e45 Mon Mar 2 16:53:07 2026 -0800

• Feedback from CR, refs #37193
  • src/hg/makeDb/trackDb/human/hg38/genotypeArrays.html - lines changed 1, context: html, text, full: html, text

2e404f055cc699b47719d19c9ff81682c065bb5e Mon Mar 2 17:57:57 2026 -0800

• Fixing a missing character in the lua rules for the docs markdown, refs #36894
  • docs/page_template.md - lines changed 2, context: html, text, full: html, text
  • docs/staticPage.lua - lines changed 1, context: html, text, full: html, text

99d7b5a5db773224bce4920bb92a3e278e1dabb0 Mon Mar 2 18:50:27 2026 -0800

• Removing color lines (and itemRgb) for tracks that are table tracks and have the color designated in the itemRgb field of the file. This bug was introduced when we made itemRgb default, it's a weird interaction and they should not have had color settings designated, refs #37183
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra - lines changed 17, context: html, text, full: html, text

203ec1e4bada4087ee20819ddf8d50b4b7c33a0c Mon Mar 2 18:56:52 2026 -0800

• Removing color lines (and itemRgb) for tracks that are table tracks and have the color designated in the itemRgb field of the file. This bug was introduced when we made itemRgb default, it's a weird interaction and they should not have had color settings designated, refs #37180
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

28d44b10ce702bd6ef275947da83d5c11e96c746 Mon Mar 2 19:57:19 2026 -0800

• Making updates to the mm10 cCREs track from Zhiping feedback, changing the priorities to be by track name (alphabetically), removing roadmap project for mouse encode, credits, etc. Also a small edit to the released human track, refs #37131
  • src/hg/makeDb/trackDb/human/hg38/coreCollection.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/cCREregistry.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/coreCollection.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode.cCREs.override.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra - lines changed 86, context: html, text, full: html, text

3647084be920c90718eafc5b419ca2992ae65817 Thu Mar 5 10:37:37 2026 -0800

• Adding additional terms to the glossary page, refs #35259
  • docs/genomeBrowserGlossary.md - lines changed 112, context: html, text, full: html, text

adbb81edbcdfde3cde3c27f9756a6e18fd3abdb1 Mon Mar 9 09:27:41 2026 -0700

• Small fixes to the lua rules that were messing up the column spacing for markdown tables, and a double escaping when links were placed inside tables, refs #36894
  • docs/staticPage.lua - lines changed 2, context: html, text, full: html, text