e5d0dcc14f3656db7b358b239477a9c3e19d9e51 gperez2 Wed Feb 18 16:10:47 2026 -0800 Updating the jaspar URLs for the assemblies, refs #36264 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index f6493091b68..8d4a1670762 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -56,38 +56,38 @@ <p>Smaller software changes are not announced here. A summary of the three-weekly release changes can be found <a target=_blank href="https://genecats.gi.ucsc.edu/builds/versions.html">here</a>. For the full list of our daily code changes head to our <a href="https://github.com/ucscGenomeBrowser/kent/commits/master" target=_blank>GitHub page</a>. Lastly, see our <a href="credits.html" target="_blank"> credits page</a> for acknowledgments of the data we host.</p> <!-- ============= 2025 archived news ============= --> <a name="2026"></a> <a name="021826"></a> <h2>Feb. 18, 2026 JASPAR 2026 tracks for 8 assemblies</h2> <p> We are happy to announce the release of the JASPAR 2026 tracks for -<a href="/cgi-bin/hgTrackUi?db=hg38&g=jaspar" target="_blank">hg38</a>, -<a href="/cgi-bin/hgTrackUi?db=mm39&g=jaspar" target="_blank">mm39</a>, -<a href="/cgi-bin/hgTrackUi?db=danRer11&g=jaspar" target="_blank">danRer11</a>, -<a href="/cgi-bin/hgTrackUi?db=galGal6&g=jaspar" target="_blank">galGal6</a>, -<a href="/cgi-bin/hgTrackUi?db=dm6&g=jaspar" target="_blank">dm6</a>, -<a href="/cgi-bin/hgTrackUi?db=ce11&g=jaspar" target="_blank">ce11</a>, -<a href="/cgi-bin/hgTrackUi?db=ci3&g=jaspar" target="_blank">ci3</a>, and -<a href="/cgi-bin/hgTrackUi?db=ci3&g=jaspar" target="_blank">sacCer3</a>. +<a href="/cgi-bin/hgTrackUi?db=hg38&position=default&g=jaspar" target="_blank">hg38</a>, +<a href="/cgi-bin/hgTrackUi?db=mm39&position=default&g=jaspar" target="_blank">mm39</a>, +<a href="/cgi-bin/hgTrackUi?db=danRer11&position=default&g=jaspar" target="_blank">danRer11</a>, +<a href="/cgi-bin/hgTrackUi?db=galGal6&position=default&g=jaspar" target="_blank">galGal6</a>, +<a href="/cgi-bin/hgTrackUi?db=dm6&position=default&g=jaspar" target="_blank">dm6</a>, +<a href="/cgi-bin/hgTrackUi?db=ce11&position=default&g=jaspar" target="_blank">ce11</a>, +<a href="/cgi-bin/hgTrackUi?db=ci3&position=default&g=jaspar" target="_blank">ci3</a>, and +<a href="/cgi-bin/hgTrackUi?db=sacCer3&position=default&g=jaspar" target="_blank">sacCer3</a>. These tracks represent genome-wide predicted binding sites for transcription factors with binding profiles in the <a href="https://jaspar.elixir.no/about/" target="_blank">JASPAR CORE collection</a>. JASPAR is a regularly maintained open-access database that stores manually curated transcription factor (TF) binding profiles as position frequency matrices (PFMs). </p> <p> The JASPAR 2026 update expanded the JASPAR CORE collection by 12% (306 added or upgraded profiles), culminating in a set of 2,633 non-redundant TF binding profiles. Genome sequences were scanned with JASPAR 2026 CORE TF binding profiles for each taxon independently using PWMScan. For more information, see the <a href="/cgi-bin/hgTrackUi?db=hg38&g=jaspar#TRACK_HTML" target="_blank">track description page</a>. </p> <p> The JASPAR database is a joint effort among several labs (please see the latest