0db15879749b6753035c8f365e9d69b5987f4c79 lrnassar Tue Feb 17 16:33:46 2026 -0800 Adding assembly specific filters, and updating the track desc page based on author feedback, refs #36264 diff --git src/hg/makeDb/trackDb/drosophila/trackDb.ra src/hg/makeDb/trackDb/drosophila/trackDb.ra index 2fb5fd8f8de..da10e92958e 100644 --- src/hg/makeDb/trackDb/drosophila/trackDb.ra +++ src/hg/makeDb/trackDb/drosophila/trackDb.ra @@ -1,1746 +1,1749 @@ track genscan override visibility dense track geneMapper shortLabel GeneMapper longLabel GeneMapper Predictions from UCB group genes priority 37 visibility hide color 128,0,0 type genePred track intronEst #replaces record intronEst in parent dir missing/extra maxItems shortLabel Spliced ESTs longLabel $Organism ESTs That Have Been Spliced group rna priority 56 visibility dense spectrum on intronGap 30 type psl est baseColorUseSequence genbank showDiffBasesAllScales . indelDoubleInsert on indelQueryInsert on track bdtnpDnase compositeTrack on shortLabel BDTNP DNase Accs longLabel Berkeley Drosophila Transcription Network Project Chromatin Accessibility (DNase) group regulation priority 70.9 # Setting type to bed3, even though all subtracks are wig, to suppress composite-level # controls (per Tim). type bed 3 noInherit on visibility pack boxedCfg on subGroup1 view Views acc=Accessibility regions=Regions_(FDR=5%) subGroup2 stage Stage s05=S5 s09=S9 s10=S10 s11=S11 s14=S14 subGroup3 repl Replicate r1=DNase_Replicate_1 r2=DNase_Replicate_2 r3both=FDR_5%_Regions_(Intersection_of_Replicates) dimensions dimensionX=stage dimensionY=repl sortOrder stage=+ repl=+ dragAndDrop subTracks track bdtnpDnaseViewAcc parent bdtnpDnase view acc shortLabel Accessibility visibility full viewLimits 0:150 maxHeightPixels 100:30:10 autoScale off track bdtnpDnaseS5R9481 parent bdtnpDnaseViewAcc subGroups view=acc stage=s05 repl=r1 shortLabel S5 repl. 1 longLabel BDTNP Chromatin Accessibility (DNase) Stage 5, Replicate 1 type bigWig 0 4448.18 color 47,168,64 track bdtnpDnaseS5R9482 parent bdtnpDnaseViewAcc off subGroups view=acc stage=s05 repl=r2 shortLabel S5 repl. 2 longLabel BDTNP Chromatin Accessibility (DNase) Stage 5, Replicate 2 type bigWig 0 5159.31 color 47,168,64 track bdtnpDnaseS9R9127 parent bdtnpDnaseViewAcc subGroups view=acc stage=s09 repl=r1 shortLabel S9 repl. 1 longLabel BDTNP Chromatin Accessibility (DNase) Stage 9, Replicate 1 type bigWig 0 5399.51 color 243,110,22 track bdtnpDnaseS9R9128 parent bdtnpDnaseViewAcc off subGroups view=acc stage=s09 repl=r2 shortLabel S9 repl. 2 longLabel BDTNP Chromatin Accessibility (DNase) Stage 9, Replicate 2 type bigWig 0 1273.85 color 243,110,22 track bdtnpDnaseS10R8816 parent bdtnpDnaseViewAcc subGroups view=acc stage=s10 repl=r1 shortLabel S10 repl. 1 longLabel BDTNP Chromatin Accessibility (DNase) Stage 10, Replicate 1 type bigWig 0 21242.10 color 141,24,29 track bdtnpDnaseS10R8820 parent bdtnpDnaseViewAcc off subGroups view=acc stage=s10 repl=r2 shortLabel S10 repl. 2 longLabel BDTNP Chromatin Accessibility (DNase) Stage 10, Replicate 2 type bigWig 0 21782.20 color 141,24,29 track bdtnpDnaseS11R9485 parent bdtnpDnaseViewAcc subGroups view=acc stage=s11 repl=r1 shortLabel S11 repl. 1 longLabel BDTNP Chromatin Accessibility (DNase) Stage 11, Replicate 1 type bigWig 0 6760.68 color 64,163,203 track bdtnpDnaseS11R9486 parent bdtnpDnaseViewAcc off subGroups view=acc stage=s11 repl=r2 shortLabel S11 repl. 2 longLabel BDTNP Chromatin Accessibility (DNase) Stage 11, Replicate 2 type bigWig 0 7309.80 color 64,163,203 track bdtnpDnaseS14R9477 parent bdtnpDnaseViewAcc subGroups view=acc stage=s14 repl=r1 shortLabel S14 repl. 1 longLabel BDTNP Chromatin Accessibility (DNase) Stage 14, Replicate 1 type bigWig 0 15458.60 color 109,57,160 track bdtnpDnaseS14R9478 parent bdtnpDnaseViewAcc off subGroups view=acc stage=s14 repl=r2 shortLabel S14 repl. 2 longLabel BDTNP Chromatin Accessibility (DNase) Stage 14, Replicate 2 type bigWig 0 27690.70 color 109,57,160 track bdtnpDnaseViewRegions parent bdtnpDnase view regions shortLabel Regions (FDR=5%) visibility squish type bed 3 track bdtnpDnaseAccS5 parent bdtnpDnaseViewRegions subGroups view=regions stage=s05 repl=r3both shortLabel S5 Regions longLabel BDTNP Chromatin Accessibility (DNase) Stage 5, FDR 5% euchromatic accessible regions color 47,168,64 track bdtnpDnaseAccS9 parent bdtnpDnaseViewRegions subGroups view=regions stage=s09 repl=r3both shortLabel S9 Regions longLabel BDTNP Chromatin Accessibility (DNase) Stage 9, FDR 5% euchromatic accessible regions color 243,110,22 track bdtnpDnaseAccS10 parent bdtnpDnaseViewRegions subGroups view=regions stage=s10 repl=r3both shortLabel S10 Regions longLabel BDTNP Chromatin Accessibility (DNase) Stage 10, FDR 5% euchromatic accessible regions color 141,24,29 track bdtnpDnaseAccS11 parent bdtnpDnaseViewRegions subGroups view=regions stage=s11 repl=r3both shortLabel S11 Regions longLabel BDTNP Chromatin Accessibility (DNase) Stage 11, FDR 5% euchromatic accessible regions color 64,163,203 track bdtnpDnaseAccS14 parent bdtnpDnaseViewRegions subGroups view=regions stage=s14 repl=r3both shortLabel S14 Regions longLabel BDTNP Chromatin Accessibility (DNase) Stage 14, FDR 5% euchromatic accessible regions color 109,57,160 track bdtnpChipper compositeTrack on subGroup1 view Views best1=Best_Antibody_(FDR=1%) best25=Best_Antibody_(FDR=25%) other1=Other_Antibodies_(FDR=1%) other25=Other_Antibodies_(FDR=25%) subGroup2 factor Factor BCD=bicoid CAD=caudal GT=giant HB=hunchback KNI=knirps KR=Kruppel HKB=huckebein TLL=tailless D=Dichaete FTZ=fushi_tarazu H=hairy PRD=paired RUN=runt SLP=sloppy_paired_1 DA=daughterless DL=dorsal MAD=Mothers_against_dpp MED=Medea SHN=schnurri SNA=snail TWI=twist Z=zeste POLII=PolII TFIIB=Transcription_factor_IIB subGroup3 class Regulatory_class ape1m=Anterior-posterior_early_maternal ape2g=Anterior-posterior_early_gap ape3t=Anterior-posterior_early_terminal ape4gl=Anterior-posterior_early_gap-like app=Anterior-posterior_pair_rule dvm=Dorsal-ventral_maternal dvz=Dorsal-ventral_zygotic z=Zeste_stage_11 zzgen=General subGroup4 stage Stage s04=Stage_4-5 s09=Stage_9 s10=Stage_10 s11=Stage_11 s14=Stage_14 dimensions dimensionX=class dimensionY=factor dimA=stage dimensionAchecked s04,s09,s10,s11,s14 sortOrder class=+ factor=+ view=+ stage=+ dragAndDrop subTracks shortLabel BDTNP ChIP/chip longLabel Berkeley Drosophila Transcription Network Project Transcription Factor ChIP/chip group regulation priority 71 # Setting type to bed3, even though all subtracks are wig, to suppress composite-level # controls (per Tim). type bed 3 noInherit on visibility full boxedCfg on track bdtnpChipperViewbest1 shortLabel Best Antibody (FDR=1%) view best1 visibility pack parent bdtnpChipper viewLimits 1:10 maxHeightPixels 100:15:10 autoScale off track bdtnpBcd2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=BCD class=ape1m view=best1 stage=s04 shortLabel bcd AB 2 FDR 1% longLabel BDTNP ChIP/chip: bicoid (bcd) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 3 track bdtnpCad1Fdr1 parent bdtnpChipperViewbest1 subGroups factor=CAD class=ape1m view=best1 stage=s04 shortLabel cad AB 1 FDR 1% longLabel BDTNP ChIP/chip: caudal (cad) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 5 track bdtnpGt2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=GT class=ape2g view=best1 stage=s04 shortLabel gt AB 2 FDR 1% longLabel BDTNP ChIP/chip: giant (gt) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 7 track bdtnpHb1Fdr1 parent bdtnpChipperViewbest1 subGroups factor=HB class=ape2g view=best1 stage=s04 shortLabel hb AB 1 FDR 1% longLabel BDTNP ChIP/chip: hunchback (hb) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 9 track bdtnpHb1S9Fdr1 parent bdtnpChipperViewbest1 subGroups factor=HB class=ape2g view=best1 stage=s09 shortLabel hb AB1 S9 FDR 1% longLabel BDTNP ChIP/chip: hunchback (hb) antibody 1, stage 9 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type bigWig 0.0 24.5 priority 9 track bdtnpKni2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=KNI class=ape2g view=best1 stage=s04 shortLabel kni AB 2 FDR 1% longLabel BDTNP ChIP/chip: knirps (kni) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 15 track bdtnpKr2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=KR class=ape2g view=best1 stage=s04 shortLabel Kr AB 2 FDR 1% longLabel BDTNP ChIP/chip: Kruppel (Kr) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 19 track bdtnpHkb1Fdr1 parent bdtnpChipperViewbest1 subGroups factor=HKB class=ape3t view=best1 stage=s04 shortLabel hkb AB 1 FDR 1% longLabel BDTNP ChIP/chip: huckebein (hkb) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 21 track bdtnpTll1Fdr1 parent bdtnpChipperViewbest1 subGroups factor=TLL class=ape3t view=best1 stage=s04 shortLabel tll AB 1 FDR 1% longLabel BDTNP ChIP/chip: tailless (tll) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 27 track bdtnpD1Fdr1 parent bdtnpChipperViewbest1 subGroups factor=D class=ape4gl view=best1 stage=s04 shortLabel D AB 1 FDR 1% longLabel BDTNP ChIP/chip: Dichaete (D) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 29 # Anterior-posterior pair rule: orange track bdtnpFtz3Fdr1 parent bdtnpChipperViewbest1 subGroups factor=FTZ class=app view=best1 stage=s04 shortLabel ftz AB 3 FDR 1% longLabel BDTNP ChIP/chip: fushi tarazu (ftz) antibody 3, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,150,0 type wig 0.0 40.39 priority 31 track bdtnpH2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=H class=app view=best1 stage=s04 shortLabel h AB 2 FDR 1% longLabel BDTNP ChIP/chip: hairy (h) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,150,0 type wig 0.0 40.39 priority 35 track bdtnpPrd1Fdr1 parent bdtnpChipperViewbest1 subGroups factor=PRD class=app view=best1 stage=s04 shortLabel prd AB 1 FDR 1% longLabel BDTNP ChIP/chip: paired (prd) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,150,0 type wig 0.0 40.39 priority 37 track bdtnpRun1Fdr1 parent bdtnpChipperViewbest1 subGroups factor=RUN class=app view=best1 stage=s04 shortLabel run AB 1 FDR 1% longLabel BDTNP ChIP/chip: runt (run) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,150,0 type wig 0.0 40.39 priority 41 track bdtnpSlp11Fdr1 parent bdtnpChipperViewbest1 subGroups factor=SLP class=app view=best1 stage=s04 shortLabel slp1 AB 1 FDR 1% longLabel BDTNP ChIP/chip: sloppy paired 1 (slp1) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,150,0 type wig 0.0 40.39 priority 45 # Dorsal-ventral: blue track bdtnpDa2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=DA class=dvm view=best1 stage=s04 shortLabel da AB 2 FDR 1% longLabel BDTNP ChIP/chip: daughterless (da) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 47 track bdtnpDl3Fdr1 parent bdtnpChipperViewbest1 subGroups factor=DL class=dvm view=best1 stage=s04 shortLabel dl AB 3 FDR 1% longLabel BDTNP ChIP/chip: dorsal (dl) antibody 3, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 49 track bdtnpMad2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=MAD class=dvz view=best1 stage=s04 shortLabel mad AB 2 FDR 1% longLabel BDTNP ChIP/chip: Mothers against dpp (mad) antibody 2, stage 4-5 embryos, False Disc. Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 51 track bdtnpMed2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=MED class=dvz view=best1 stage=s04 shortLabel med AB 2 FDR 1% longLabel BDTNP ChIP/chip: Medea (med) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 53 track bdtnpMed2S10Fdr1 parent bdtnpChipperViewbest1 subGroups factor=MED class=dvz view=best1 stage=s10 shortLabel med AB2 S10 FDR1% longLabel BDTNP ChIP/chip: Medea (med) antibody 2, stage 10 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type bigWig 0.0 13.61 priority 53 track bdtnpMed2S14Fdr1 parent bdtnpChipperViewbest1 subGroups factor=MED class=dvz view=best1 stage=s14 shortLabel med AB2 S14 FDR1% longLabel BDTNP ChIP/chip: Medea (med) antibody 2, stage 14 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type bigWig 0.0 5.36 priority 53 track bdtnpShn2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=SHN class=dvz view=best1 stage=s04 shortLabel shn AB 2 FDR 1% longLabel BDTNP ChIP/chip: schnurri (shn) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 55 track bdtnpSna2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=SNA class=dvz view=best1 stage=s04 shortLabel sna AB 2 FDR 1% longLabel BDTNP ChIP/chip: snail (sna) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 61 track bdtnpTwi2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=TWI class=dvz view=best1 stage=s04 shortLabel twi AB 2 FDR 1% longLabel BDTNP ChIP/chip: twist (twi) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 65 # zeste: brown track bdtnpZ2Fdr1 parent bdtnpChipperViewbest1 subGroups factor=Z class=z view=best1 stage=s11 shortLabel z AB 2 FDR 1% longLabel BDTNP ChIP/chip: zeste (z) antibody 2, stage 11 embryos, False Discovery Rate (FDR) 1% color 100,75,0 type wig 0.0 40.39 priority 67 # general tx factors: red track bdtnpPolIIFdr1 parent bdtnpChipperViewbest1 subGroups factor=POLII class=zzgen view=best1 stage=s04 shortLabel PolII AB FDR 1% longLabel BDTNP ChIP/chip: RNA Polymerase II (PolII) antibody, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,0,0 type wig 0.0 40.39 priority 69 track bdtnpTFIIB1Fdr1 parent bdtnpChipperViewbest1 subGroups factor=TFIIB class=zzgen view=best1 stage=s04 shortLabel TFIIB AB 1 FDR 1% longLabel BDTNP ChIP/chip: Transc. factor IIB (TFIIB) antibody 1, stage 4-5 embryos, False Disc. Rate (FDR) 1% color 200,0,0 type wig 0.0 40.39 priority 71 track bdtnpChipperViewbest25 shortLabel Best Antibody (FDR=25%) view best25 visibility hide parent bdtnpChipper viewLimits 1:10 maxHeightPixels 100:15:10 autoScale off track bdtnpBcd2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=BCD class=ape1m view=best25 stage=s04 shortLabel bcd AB 2 FDR 25% longLabel BDTNP ChIP/chip: bicoid (bcd) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 4 track bdtnpCad1Fdr25 parent bdtnpChipperViewbest25 subGroups factor=CAD class=ape1m view=best25 stage=s04 shortLabel cad AB 1 FDR 25% longLabel BDTNP ChIP/chip: caudal (cad) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 6 track bdtnpGt2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=GT class=ape2g view=best25 stage=s04 shortLabel gt AB 2 FDR 25% longLabel BDTNP ChIP/chip: giant (gt) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 8 track bdtnpHb1Fdr25 parent bdtnpChipperViewbest25 subGroups factor=HB class=ape2g view=best25 stage=s04 shortLabel hb AB 1 FDR 25% longLabel BDTNP ChIP/chip: hunchback (hb) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 10 track bdtnpHb1S9Fdr25 parent bdtnpChipperViewbest25 subGroups factor=HB class=ape2g view=best25 stage=s09 shortLabel hb AB1 S9 FDR25% longLabel BDTNP ChIP/chip: hunchback (hb) antibody 1, stage 9 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type bigWig 0.0 24.5 priority 10 track bdtnpKni2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=KNI class=ape2g view=best25 stage=s04 shortLabel kni AB 2 FDR 25% longLabel BDTNP ChIP/chip: knirps (kni) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 16 track bdtnpKr2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=KR class=ape2g view=best25 stage=s04 shortLabel Kr AB 2 FDR 25% longLabel BDTNP ChIP/chip: Kruppel (Kr) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 20 track bdtnpHkb1Fdr25 parent bdtnpChipperViewbest25 subGroups factor=HKB class=ape3t view=best25 stage=s04 shortLabel hkb AB 1 FDR 25% longLabel BDTNP ChIP/chip: huckebein (hkb) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 22 track bdtnpTll1Fdr25 parent bdtnpChipperViewbest25 subGroups factor=TLL class=ape3t view=best25 stage=s04 shortLabel tll AB 1 FDR 25% longLabel BDTNP ChIP/chip: tailless (tll) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 28 track bdtnpD1Fdr25 parent bdtnpChipperViewbest25 subGroups factor=D class=ape4gl view=best25 stage=s04 shortLabel D AB 1 FDR 25% longLabel BDTNP ChIP/chip: Dichaete (D) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 30 track bdtnpFtz3Fdr25 parent bdtnpChipperViewbest25 subGroups factor=FTZ class=app view=best25 stage=s04 shortLabel ftz AB 3 FDR 25% longLabel BDTNP ChIP/chip: fushi tarazu (ftz) antibody 3, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,150,0 type wig 0.0 40.39 priority 32 track bdtnpH2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=H class=app view=best25 stage=s04 shortLabel h AB 2 FDR 25% longLabel BDTNP ChIP/chip: hairy (h) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,150,0 type wig 0.0 40.39 priority 36 track bdtnpPrd1Fdr25 parent bdtnpChipperViewbest25 subGroups factor=PRD class=app view=best25 stage=s04 shortLabel prd AB 1 FDR 25% longLabel BDTNP ChIP/chip: paired (prd) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,150,0 type wig 0.0 40.39 priority 38 track bdtnpRun1Fdr25 parent bdtnpChipperViewbest25 subGroups factor=RUN class=app view=best25 stage=s04 shortLabel run AB 1 FDR 25% longLabel BDTNP ChIP/chip: runt (run) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,150,0 type wig 0.0 40.39 priority 42 track bdtnpSlp11Fdr25 parent bdtnpChipperViewbest25 subGroups factor=SLP class=app view=best25 stage=s04 shortLabel slp1 AB 1 FDR 25% longLabel BDTNP ChIP/chip: sloppy paired 1 (slp1) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,150,0 type wig 0.0 40.39 priority 46 track bdtnpDa2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=DA class=dvm view=best25 stage=s04 shortLabel da AB 2 FDR 25% longLabel BDTNP ChIP/chip: daughterless (da) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 48 track bdtnpDl3Fdr25 parent bdtnpChipperViewbest25 subGroups factor=DL class=dvm view=best25 stage=s04 shortLabel dl AB 3 FDR 25% longLabel BDTNP ChIP/chip: dorsal (dl) antibody 3, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 50 track bdtnpMad2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=MAD class=dvz view=best25 stage=s04 shortLabel mad AB 2 FDR 25% longLabel BDTNP ChIP/chip: Mothers against dpp (mad) antibody 2, stage 4-5 embryos, False Disc. Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 52 track bdtnpMed2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=MED class=dvz view=best25 stage=s04 shortLabel med AB 2 FDR 25% longLabel BDTNP ChIP/chip: Medea (med) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 54 track bdtnpMed2S10Fdr25 parent bdtnpChipperViewbest25 subGroups factor=MED class=dvz view=best25 stage=s10 shortLabel med AB2 S10 FDR25% longLabel BDTNP ChIP/chip: Medea (med) antibody 2, stage 10 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type bigWig 0.0 13.61 priority 54 track bdtnpMed2S14Fdr25 parent bdtnpChipperViewbest25 subGroups factor=MED class=dvz view=best25 stage=s14 shortLabel med AB2 S14 FDR25% longLabel BDTNP ChIP/chip: Medea (med) antibody 2, stage 14 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type bigWig 0.0 5.36 priority 54 track bdtnpShn2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=SHN class=dvz view=best25 stage=s04 shortLabel shn AB 2 FDR 25% longLabel BDTNP ChIP/chip: schnurri (shn) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 56 track bdtnpSna2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=SNA class=dvz view=best25 stage=s04 shortLabel sna AB 2 FDR 25% longLabel BDTNP ChIP/chip: snail (sna) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 62 track bdtnpTwi2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=TWI class=dvz view=best25 stage=s04 shortLabel twi AB 2 FDR 25% longLabel BDTNP ChIP/chip: twist (twi) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 66 track bdtnpZ2Fdr25 parent bdtnpChipperViewbest25 subGroups factor=Z class=z view=best25 stage=s11 shortLabel z AB 2 FDR 25% longLabel BDTNP ChIP/chip: zeste (z) antibody 2, stage 11 embryos, False Discovery Rate (FDR) 25% color 100,75,0 type wig 0.0 40.39 priority 68 track bdtnpPolIIFdr25 parent bdtnpChipperViewbest25 subGroups factor=POLII class=zzgen view=best25 stage=s04 shortLabel PolII AB FDR 25% longLabel BDTNP ChIP/chip: RNA Polymerase II (PolII) antibody, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,0,0 type wig 0.0 40.39 priority 70 track bdtnpTFIIB1Fdr25 parent bdtnpChipperViewbest25 subGroups factor=TFIIB class=zzgen view=best25 stage=s04 shortLabel TFIIB AB 1 FDR25% longLabel BDTNP ChIP/chip: Transc. factor IIB (TFIIB) antibody 1, stage 4-5 embryos, False Disc. Rate (FDR) 25% color 200,0,0 type wig 0.0 40.39 priority 72 track bdtnpChipperViewother1 shortLabel Other Antibodies (FDR=1%) view other1 visibility hide parent bdtnpChipper viewLimits 1:10 maxHeightPixels 100:15:10 autoScale off # Anterior-posterior early: green track bdtnpBcd1Fdr1 parent bdtnpChipperViewother1 subGroups factor=BCD class=ape1m view=other1 stage=s04 shortLabel bcd AB 1 FDR 1% longLabel BDTNP ChIP/chip: bicoid (bcd) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 1 track bdtnpHb2Fdr1 parent bdtnpChipperViewother1 subGroups factor=HB class=ape2g view=other1 stage=s04 shortLabel hb AB 2 FDR 1% longLabel BDTNP ChIP/chip: hunchback (hb) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 11 track bdtnpHb2S9Fdr1 parent bdtnpChipperViewother1 subGroups factor=HB class=ape2g view=other1 stage=s09 shortLabel hb AB2 S9 FDR 1% longLabel BDTNP ChIP/chip: hunchback (hb) antibody 2, stage 9 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type bigWig 0.0 17.4 priority 11 track bdtnpKni1Fdr1 parent bdtnpChipperViewother1 subGroups factor=KNI class=ape2g view=other1 stage=s04 shortLabel kni AB 1 FDR 1% longLabel BDTNP ChIP/chip: knirps (kni) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 13 track bdtnpKr1Fdr1 parent bdtnpChipperViewother1 subGroups factor=KR class=ape2g view=other1 stage=s04 shortLabel Kr AB 1 FDR 1% longLabel BDTNP ChIP/chip: Kruppel (Kr) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 17 track bdtnpHkb2Fdr1 parent bdtnpChipperViewother1 subGroups factor=HKB class=ape3t view=other1 stage=s04 shortLabel hkb AB 2 FDR 1% longLabel BDTNP ChIP/chip: huckebein (hkb) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 23 track bdtnpHkb3Fdr1 parent bdtnpChipperViewother1 subGroups factor=HKB class=ape3t view=other1 stage=s04 shortLabel hkb AB 3 FDR 1% longLabel BDTNP ChIP/chip: huckebein (hkb) antibody 3, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,150,0 type wig 0.0 40.39 priority 25 track bdtnpH1Fdr1 parent bdtnpChipperViewother1 subGroups factor=H class=app view=other1 stage=s04 shortLabel h AB 1 FDR 1% longLabel BDTNP ChIP/chip: hairy (h) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,150,0 type wig 0.0 40.39 priority 33 track bdtnpPrd2Fdr1 parent bdtnpChipperViewother1 subGroups factor=PRD class=app view=other1 stage=s04 shortLabel prd AB 2 FDR 1% longLabel BDTNP ChIP/chip: paired (prd) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,150,0 type wig 0.0 40.39 priority 39 track bdtnpRun2Fdr1 parent bdtnpChipperViewother1 subGroups factor=RUN class=app view=other1 stage=s04 shortLabel run AB 2 FDR 1% longLabel BDTNP ChIP/chip: runt (run) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 200,150,0 type wig 0.0 40.39 priority 43 track bdtnpShn3Fdr1 parent bdtnpChipperViewother1 subGroups factor=SHN class=dvz view=other1 stage=s04 shortLabel shn AB 3 FDR 1% longLabel BDTNP ChIP/chip: schnurri (shn) antibody 3, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 57 track bdtnpSna1Fdr1 parent bdtnpChipperViewother1 subGroups factor=SNA class=dvz view=other1 stage=s04 shortLabel sna AB 1 FDR 1% longLabel BDTNP ChIP/chip: snail (sna) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 59 track bdtnpTwi1Fdr1 parent bdtnpChipperViewother1 subGroups factor=TWI class=dvz view=other1 stage=s04 shortLabel twi AB 1 FDR 1% longLabel BDTNP ChIP/chip: twist (twi) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 1% color 0,0,200 type wig 0.0 40.39 priority 63 track bdtnpChipperViewother25 shortLabel Other Antibodies (FDR=25%) view other25 visibility hide parent bdtnpChipper viewLimits 1:10 maxHeightPixels 100:15:10 autoScale off track bdtnpBcd1Fdr25 parent bdtnpChipperViewother25 subGroups factor=BCD class=ape1m view=other25 stage=s04 shortLabel bcd AB 1 FDR 25% longLabel BDTNP ChIP/chip: bicoid (bcd) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 2 track bdtnpHb2Fdr25 parent bdtnpChipperViewother25 subGroups factor=HB class=ape2g view=other25 stage=s04 shortLabel hb AB 2 FDR 25% longLabel BDTNP ChIP/chip: hunchback (hb) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 12 track bdtnpHb2S9Fdr25 parent bdtnpChipperViewother25 subGroups factor=HB class=ape2g view=other25 stage=s09 shortLabel hb AB2 S9 FDR25% longLabel BDTNP ChIP/chip: hunchback (hb) antibody 2, stage 9 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type bigWig 0.0 17.4 priority 12 track bdtnpKni1Fdr25 parent bdtnpChipperViewother25 subGroups factor=KNI class=ape2g view=other25 stage=s04 shortLabel kni AB 1 FDR 25% longLabel BDTNP ChIP/chip: knirps (kni) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 14 track bdtnpKr1Fdr25 parent bdtnpChipperViewother25 subGroups factor=KR class=ape2g view=other25 stage=s04 shortLabel Kr AB 1 FDR 25% longLabel BDTNP ChIP/chip: Kruppel (Kr) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 18 track bdtnpHkb2Fdr25 parent bdtnpChipperViewother25 subGroups factor=HKB class=ape3t view=other25 stage=s04 shortLabel hkb AB 2 FDR 25% longLabel BDTNP ChIP/chip: huckebein (hkb) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 24 track bdtnpHkb3Fdr25 parent bdtnpChipperViewother25 subGroups factor=HKB class=ape3t view=other25 stage=s04 shortLabel hkb AB 3 FDR 25% longLabel BDTNP ChIP/chip: huckebein (hkb) antibody 3, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,150,0 type wig 0.0 40.39 priority 26 track bdtnpH1Fdr25 parent bdtnpChipperViewother25 subGroups factor=H class=app view=other25 stage=s04 shortLabel h AB 1 FDR 25% longLabel BDTNP ChIP/chip: hairy (h) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,150,0 type wig 0.0 40.39 priority 34 track bdtnpPrd2Fdr25 parent bdtnpChipperViewother25 subGroups factor=PRD class=app view=other25 stage=s04 shortLabel prd AB 2 FDR 25% longLabel BDTNP ChIP/chip: paired (prd) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,150,0 type wig 0.0 40.39 priority 40 track bdtnpRun2Fdr25 parent bdtnpChipperViewother25 subGroups factor=RUN class=app view=other25 stage=s04 shortLabel run AB 2 FDR 25% longLabel BDTNP ChIP/chip: runt (run) antibody 2, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 200,150,0 type wig 0.0 40.39 priority 44 track bdtnpShn3Fdr25 parent bdtnpChipperViewother25 subGroups factor=SHN class=dvz view=other25 stage=s04 shortLabel shn AB 3 FDR 25% longLabel BDTNP ChIP/chip: schnurri (shn) antibody 3, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 58 track bdtnpSna1Fdr25 parent bdtnpChipperViewother25 subGroups factor=SNA class=dvz view=other25 stage=s04 shortLabel sna AB 1 FDR 25% longLabel BDTNP ChIP/chip: snail (sna) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 60 track bdtnpTwi1Fdr25 parent bdtnpChipperViewother25 subGroups factor=TWI class=dvz view=other25 stage=s04 shortLabel twi AB 1 FDR 25% longLabel BDTNP ChIP/chip: twist (twi) antibody 1, stage 4-5 embryos, False Discovery Rate (FDR) 25% color 0,0,200 type wig 0.0 40.39 priority 64 track mzDy1Dp2Ag1_phast shortLabel Conservation longLabel D.mel./D.yakuba/D.pseudo./A.gambiae Multiz Alignments & phastCons Scores group compGeno priority 100 visibility pack type wigMaf 0.0 1.0 maxHeightPixels 100:40:11 wiggle mzDy1Dp2Ag1_phast_wig yLineOnOff Off autoScale Off pairwise myp2a speciesOrder droYak1 dp2 anoGam1 track chainDp2 shortLabel D. pseudo. Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 138 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain dp2 otherDb dp2 track netDp2 shortLabel D. pseudo. Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 138.1 visibility hide spectrum on type netAlign dp2 chainDp2 otherDb dp2 track chainDp3 shortLabel D. pseudo. Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 138 visibility hide color 100,50,0 altColor 255,240,200 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T spectrum on type chain dp3 otherDb dp3 track netDp3 shortLabel D. pseudo. Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 138.1 visibility hide spectrum on type netAlign dp3 chainDp3 otherDb dp3 track chainDroSim1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 142 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droSim1 otherDb droSim1 track netDroSim1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 142.1 visibility hide spectrum on type netAlign droSim1 chainDroSim1 otherDb droSim1 track chainDroSec1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 141.5 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droSec1 otherDb droSec1 track netDroSec1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 141.6 visibility hide spectrum on type netAlign droSec1 chainDroSec1 otherDb droSec1 track chainDroYak1 shortLabel D. yakuba Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 141 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droYak1 otherDb droYak1 track netDroYak1 shortLabel D. yakuba Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 141.1 visibility hide spectrum on type netAlign droYak1 chainDroYak1 otherDb droYak1 track chainDroYak2 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 141 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droYak2 otherDb droYak2 track netDroYak2 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 141.1 visibility hide spectrum on type netAlign droYak2 chainDroYak2 otherDb droYak2 track chainDroEre1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 140 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droEre1 otherDb droEre1 track netDroEre1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 140.1 visibility hide spectrum on type netAlign droEre1 chainDroEre1 otherDb droEre1 track chainDroAna1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 139 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droAna1 otherDb droAna1 track netDroAna1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 139.1 visibility hide spectrum on type netAlign droAna1 chainDroAna1 otherDb droAna1 track chainDroMoj1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 135 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droMoj1 otherDb droMoj1 track netDroMoj1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 135.1 visibility hide spectrum on type netAlign droMoj1 chainDroMoj1 otherDb droMoj1 track chainDroVir1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 134 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droVir1 otherDb droVir1 track netDroVir1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 134.1 visibility hide spectrum on type netAlign droVir1 chainDroVir1 otherDb droVir1 track chainDroGri1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 133 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droGri1 otherDb droGri1 track netDroGri1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 133.1 visibility hide spectrum on type netAlign droGri1 chainDroGri1 otherDb droGri1 track chainDroAna2 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 139 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droAna2 otherDb droAna2 track netDroAna2 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 139.1 visibility hide spectrum on type netAlign droAna2 chainDroAna2 otherDb droAna2 track chainDroMoj2 release alpha shortLabel ($o_db) $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 135 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droMoj2 otherDb droMoj2 track netDroMoj2 release alpha shortLabel ($o_db) $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 135.1 visibility hide spectrum on type netAlign droMoj2 chainDroMoj2 otherDb droMoj2 track chainDroVir2 release alpha shortLabel ($o_db) $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 134 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droVir2 otherDb droVir2 track netDroVir2 release alpha shortLabel ($o_db) $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 134.1 visibility hide spectrum on type netAlign droVir2 chainDroVir2 otherDb droVir2 track chainApiMel1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 131 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain apiMel1 otherDb apiMel1 track netApiMel1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 131.1 visibility hide spectrum on type netAlign apiMel1 chainApiMel1 otherDb apiMel1 track chainApiMel2 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 131 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain apiMel2 otherDb apiMel2 track netApiMel2 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 131.1 visibility hide spectrum on type netAlign apiMel2 chainApiMel2 otherDb apiMel2 track chainAnoGam1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 132.1 visibility hide color 100,50,0 altColor 255,240,200 matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T spectrum on type chain anoGam1 otherDb anoGam1 track netAnoGam1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 132.2 visibility hide spectrum on type netAlign anoGam1 chainAnoGam1 otherDb anoGam1 track chainDroPer1 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments group compGeno priority 138.4 visibility hide color 100,50,0 altColor 255,240,200 spectrum on type chain droPer1 otherDb droPer1 track netDroPer1 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net group compGeno priority 138.5 visibility hide spectrum on type netAlign droPer1 chainDroPer1 otherDb droPer1 track blatFugu override longLabel $o_Organism ($o_date) Translated Blat Alignments priority 113 visibility dense colorChromDefault off otherDb fr1 track bdgpGene shortLabel FlyBase Genes longLabel Protein-Coding Genes from FlyBase group genes priority 34 visibility pack color 0,100,180 type genePred bdgpGenePep hgGene on hgsid on directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s track bdgpNonCoding shortLabel FlyBase Non-coding longLabel Non-Coding Genes from FlyBase group genes priority 34.5 visibility pack color 30,130,210 type genePred track blastDm1FB override longLabel D. melanogaster Proteins visibility pack track rmsk #replaces record rmsk in parent dir missing/extra maxWindowToDraw shortLabel RepeatMasker longLabel Repeating Elements by RepeatMasker group varRep priority 149.1 visibility dense spectrum on type rmsk canPack off searchTable bdgpGene searchMethod exact termRegex CG[0-9]+-R. searchType genePred searchPriority 1 searchName bdgpGenePrefix searchTable bdgpGene searchMethod exact termRegex CG[0-9]+ dontCheck CG[0-9]+-R[A-Z] query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 1.1 searchName bdgpGeneFB searchTable bdgpGene searchMethod exact termRegex FB[a-z]{2}[0-9]{7}[0-9]* query select chrom,txStart,txEnd,name from %s where name like '%s-R_' xrefTable bdgpGeneInfo xrefQuery select bdgpName,flyBaseId from %s where flyBaseId like '%s' searchDescription FlyBase ID of BDGP Gene searchPriority 1.2 searchName bdgpGeneSymbol searchTable bdgpGene searchMethod fuzzy termRegex [^[:space:]]+ xrefTable bdgpGeneInfo xrefQuery select bdgpName,symbol from %s where symbol like '%%%s%%' query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 1.3 searchTable bdgpNonCoding searchMethod exact searchType genePred termRegex [^[:space:]]+ searchPriority 2 searchName bdgpNonCodingPrefix searchTable bdgpNonCoding searchMethod exact termRegex [^[:space:]]+ query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 2.1 searchName bdgpNonCodingFB searchTable bdgpNonCoding searchMethod exact termRegex FB[a-z]{2}[0-9]{7}[0-9]* query select chrom,txStart,txEnd,name from %s where name like '%s-R_' xrefTable bdgpNonCodingInfo xrefQuery select bdgpName,flyBaseId from %s where flyBaseId like '%s' searchDescription FlyBase ID of BDGP Non-coding Gene searchPriority 2.2 searchName bdgpNonCodingSymbol searchTable bdgpNonCoding searchMethod fuzzy termRegex [^[:space:]]+ xrefTable bdgpNonCodingInfo xrefQuery select bdgpName,symbol from %s where symbol like '%%%s%%' query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 2.3 searchTable bdgpLiftGene searchMethod exact termRegex CG[0-9]+-R. searchType genePred searchPriority 3 searchName bdgpLiftGenePrefix searchTable bdgpLiftGene searchMethod exact termRegex CG[0-9]+ dontCheck CG[0-9]+-R[A-Z] query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 3.1 searchName bdgpLiftGeneFB searchTable bdgpLiftGene searchMethod exact termRegex FB[a-z]{2}[0-9]{7}[0-9]* query select chrom,txStart,txEnd,name from %s where name like '%s-R_' xrefTable bdgpLiftGeneInfo xrefQuery select bdgpName,flyBaseId from %s where flyBaseId like '%s' searchDescription FlyBase ID of BDGP Gene searchPriority 3.2 searchName bdgpLiftGeneSymbol searchTable bdgpLiftGene searchMethod fuzzy termRegex [^[:space:]]+ xrefTable bdgpLiftGeneInfo xrefQuery select bdgpName,symbol from %s where symbol like '%%%s%%' query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 3.3 searchTable bdgpLiftNonCoding searchMethod exact searchType genePred termRegex [^[:space:]]+ searchPriority 4 searchName bdgpLiftNonCodingPrefix searchTable bdgpLiftNonCoding searchMethod exact termRegex [^[:space:]]+ query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 4.1 searchName bdgpLiftNonCodingFB searchTable bdgpLiftNonCoding searchMethod exact termRegex FB[a-z]{2}[0-9]{7}[0-9]* query select chrom,txStart,txEnd,name from %s where name like '%s-R_' xrefTable bdgpLiftNonCodingInfo xrefQuery select bdgpName,flyBaseId from %s where flyBaseId like '%s' searchDescription FlyBase ID of BDGP Non-coding Gene searchPriority 4.2 searchName bdgpLiftNonCodingSymbol searchTable bdgpLiftNonCoding searchMethod fuzzy termRegex [^[:space:]]+ xrefTable bdgpLiftNonCodingInfo xrefQuery select bdgpName,symbol from %s where symbol like '%%%s%%' query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 4.3 searchTable flyBaseGene searchMethod exact termRegex CG[0-9]+-R[A-Z][A-Z]? searchType genePred searchPriority 1 searchName flyBaseGenePrefix searchTable flyBaseGene searchMethod exact termRegex CG[0-9]+ dontCheck CG[0-9]+-R[A-Z][A-Z]? query select chrom,txStart,txEnd,name from %s where name like '%s-R_' searchPriority 1.1 searchName flyBaseGeneFBgn searchTable flyBaseGene searchMethod exact searchType genePred termRegex FBgn[0-9]{7}[0-9]* xrefTable flyBase2004Xref xrefQuery select name,fbgn from %s where fbgn like '%s' searchDescription FlyBase FBgn ID of FlyBase Gene searchPriority 1.2 searchName flyBaseGeneFBtr searchTable flyBaseGene searchMethod exact searchType genePred termRegex FBtr[0-9]{7}[0-9]* xrefTable flyBase2004Xref xrefQuery select name,fbtr from %s where fbtr like '%s' searchDescription FlyBase FBtr ID of FlyBase Gene searchPriority 1.2 searchName flyBaseGeneFBpp searchTable flyBaseGene searchMethod exact searchType genePred termRegex FBpp[0-9]{7}[0-9]* xrefTable flyBase2004Xref xrefQuery select name,fbpp from %s where fbpp like '%s' searchDescription FlyBase FBpp ID of FlyBase Gene searchPriority 1.2 searchName flyBaseGeneFBan searchTable flyBaseGene searchMethod exact searchType genePred termRegex FBan[0-9]{7}[0-9]* xrefTable flyBase2004Xref xrefQuery select name,fban from %s where fban like '%s' searchDescription FlyBase FBan ID of FlyBase Gene searchPriority 1.2 searchName flyBaseGeneSymbol searchTable flyBaseGene searchMethod fuzzy searchType genePred termRegex [^[:space:]]+ xrefTable flyBase2004Xref xrefQuery select name,symbol from %s where symbol like '%%%s%%' searchPriority 1.3 searchName flyBaseGeneSymbolOneLetter searchTable flyBaseGene searchMethod exact searchType genePred termRegex [A-Z] dontCheck [^[:space:]]+ xrefTable flyBase2004Xref xrefQuery select name,symbol from %s where symbol like '%s' searchPriority 1.3 searchTable flyBaseNoncoding searchMethod exact searchType bed termRegex C[GR][0-9]+(-R[A-Z])? searchPriority 2 searchName flyBaseNoncodingPrefix searchTable flyBaseNoncoding searchMethod exact termRegex CR[0-9]+ dontCheck C[GR][0-9]+-R[A-Z] query select chrom,chromStart,chromEnd,name from %s where name like '%s-R_' searchPriority 2.1 searchName flyBaseNoncodingFBgn searchTable flyBaseNoncoding searchMethod exact searchType bed termRegex FBgn[0-9]{7}[0-9]* shortCircuit 1 xrefTable flyBase2004Xref xrefQuery select name,fbgn from %s where fbgn like '%s' searchDescription FlyBase FBgn ID of FlyBase Noncoding Gene searchPriority 2.2 searchName flyBaseNoncodingFBtr searchTable flyBaseNoncoding searchMethod exact searchType bed termRegex FBtr[0-9]{7}[0-9]* shortCircuit 1 xrefTable flyBase2004Xref xrefQuery select name,fbtr from %s where fbtr like '%s' searchDescription FlyBase FBtr ID of FlyBase Noncoding Gene searchPriority 2.2 searchName flyBaseNoncodingFBan searchTable flyBaseNoncoding searchMethod exact searchType bed termRegex FBan[0-9]{7}[0-9]* shortCircuit 1 xrefTable flyBase2004Xref xrefQuery select name,fban from %s where fban like '%s' searchDescription FlyBase FBan ID of FlyBase Noncoding Gene searchPriority 2.2 searchName flyBaseNoncodingSymbol searchTable flyBaseNoncoding searchMethod fuzzy searchType bed termRegex [^[:space:]]+ xrefTable flyBase2004Xref xrefQuery select name,symbol from %s where symbol like '%%%s%%' searchPriority 2.3 searchName miRNAPrefix searchTable miRNA searchMethod prefix searchType bed shortCircuit 1 termRegex dme-(mir|let|mir-iab|bantam)(-[0-9]+[a-z]?)? dontCheck dme-(mir|let|mir-iab|bantam)(-[0-9]+[a-z]?(-[0-9]+)?)? searchPriority 21 searchTable miRNA searchMethod exact searchType bed shortCircuit 1 termRegex dme-(mir|let|mir-iab|bantam)(-.+)? searchPriority 21.5 searchTable geneMapper searchMethod exact searchType genePred termRegex NM_[0-9]+ searchPriority 50 searchTable cytoBand searchMethod exact searchType bed shortCircuit 1 termRegex [0-9]+[A-Z][0-9]+ searchPriority 6 padding 5000 searchTable ensGene searchType genePred shortCircuit 1 termRegex FBtr0[0-9]+(\.[0-9]+)? searchPriority 50 searchName ensGeneGtpGene searchTable ensGene searchType genePred searchMethod prefix shortCircuit 1 xrefTable ensGtp xrefQuery select transcript,gene from %s where gene like '%s%%' termRegex FBgn0[0-9]+(\.[0-9]+)? searchPriority 50 searchName ensDotPrefix searchTable ensGene query select chrom,txStart,txEnd,name from %s where name like '%s.%%' shortCircuit 1 termRegex FBtr0[0-9]+(\.[0-9]+)? searchPriority 50 searchName ensGeneGtpProtein searchTable ensGene searchType genePred searchMethod prefix shortCircuit 1 xrefTable ensGtp xrefQuery select transcript,protein from %s where protein like '%s%%' termRegex FBpp0[0-9]+(\.[0-9]+)? + +track jaspar2026 override +filterValues.TFName abd-A,Abd-B,ac,achi,acj6,Adf1,Aef1,al,amos,Antp,aop,ap,ara,Atf-2,Atf3,Atf6,ato,Awh,bab1,bap,bcd,BEAF-32,Bgb::run,B-H1,B-H2,bigmax,bin,Blimp-1,bowl,br,brk,bs,bsh,BtbVII,btd,Bteb2,btn,byn,C15,cad,caup,Cf2,cg,CG11085,CG11294,CG11617,CG12605,CG15696,CG18599,CG3065,CG32105,CG32532,CG34031,CG4328,CG4360,CG4854,CG7928,CG8319,CG9876,CHES-1-like,ci,Clamp,clk,cnc::maf-S,crc,CrebA,CrebB,Crg-1,croc,crol,crp,ct,CTCF,cwo,cyc,D,D1,D19B,da,dar1,Dbx,Deaf1,Dfd,Dif,dimm,dl,Dll,dm,dmrt93B,dmrt99B,Doc2,dpn,Dr,Dref,dsf,dsx,dve,E5,EcR,EcR::usp,Eip74EF,Eip75B,Elba1,Elba2,ems,en,erm,ERR,esg,E(spl)m3-HLH,E(spl)m8-HLH,E(spl)mbeta-HLH,E(spl)mdelta-HLH,E(spl)mgamma-HLH,Ets21C,Ets65A,Ets96B,Ets97D,Ets98B,eve,ewg,exd,exex,fd59A,Fer1,Fer2,Fer3,fkh,FoxL1,foxo,FoxP,fru,ftz,ftz-f1,GATAd,GATAe,gcm,gcm2,grh,grn,gsb,Gsc,gt,H2.0,hb,hbn,Hey,HGTX,HHEX,hkb,HLH4C,Hmx,Hnf4,hng1,hr3,Hr38,Hr39,Hr78,hry,Hsf,hth,ind,insv,inv,Jra,Kah,kay,ken,klu,kn,kni,knrl,Kr,l(3)neo38,lab,lbe,lbl,Lim1,Lim3,lmd,lms,luna,lz,M1BP,Mad,Max,mid,mirr,Mitf,Mnt,Myb,nau,NK7.1,nub,oc,odd,OdsH,onecut,opa,Optix,org-1,otp,ovo,pan,pb,pdm2,pdm3,Pdp1,PHDP,pho,phol,pita,pnr,pnt,Poxm,Pph13,prd,Ptx1,Rel,repo,retn,Rfx,rib,ro,run,Rx,sage,sc,schlank,Scr,scrt,sd,sens,Six4,slbo,slou,slp1,slp2,sna,so,Sox100B,Sox102F,Sox14,Sox15,Sox21a,Sox21b,SoxN,Sp1,Spps,sqz,SREBP,srp,Sry-beta,Sry-delta,ss,Stat92E,sug,Su(H),su(Hw),sv,svp,TfAP-2,tin,tj,tll,toy,Trl,ttk,tup,twi,tx,Ubx,unc-4,unpg,Usf,usp,vfl,vis,vnd,vri,Vsx1,Vsx2,vvl,wor,Xbp1,Xrp1,z,zen,zen2,ZIPIC