0db15879749b6753035c8f365e9d69b5987f4c79 lrnassar Tue Feb 17 16:33:46 2026 -0800 Adding assembly specific filters, and updating the track desc page based on author feedback, refs #36264 diff --git src/hg/makeDb/trackDb/squirt/trackDb.ra src/hg/makeDb/trackDb/squirt/trackDb.ra index 4dcc6a92d60..7d7f48d79fe 100644 --- src/hg/makeDb/trackDb/squirt/trackDb.ra +++ src/hg/makeDb/trackDb/squirt/trackDb.ra @@ -1,42 +1,44 @@ track refGene override release beta,public priority 35 track mrna override spectrum on track intronEst #replaces record intronEst in parent dir missing/extra maxItems shortLabel Spliced ESTs longLabel $Organism ESTs That Have Been Spliced group rna priority 56 visibility dense spectrum on intronGap 30 type psl est baseColorUseSequence genbank showDiffBasesAllScales . indelDoubleInsert on indelQueryInsert on track xenoMrna override visibility dense track rmsk #replaces record rmsk in parent dir missing/extra maxWindowToDraw shortLabel RepeatMasker longLabel Repeating Elements by RepeatMasker group varRep priority 149.1 visibility dense spectrum on type rmsk canPack off #Overrides from visibility.ra track blastHg16KG override visibility pack +track jaspar2026 override +filterValues.TFName AP4,Arid3,Atbf,Atoh7,Brachyury,Bsx,Cdx,Cebpg,Creb1,Dlx-b,Dlx-c,Emx,Erf-a,Etv1/4/5,Fli-Erg-a,Fli-Erg-b,Fli-Erg-c,Fos-b,FoxA-a,FoxA-b,FoxB,FoxD-b,FoxE,FoxF,FoxG,FoxI-a,FoxI-b,FoxI-c,FoxK,FoxL2,FoxM,FoxO,FoxQ,GATA1/2/3,GATA-a,Gsx,Hes-b,Hes-c,Hex,Hey,Hmbox1,Hnf1,HNF4,Hox1,Hox3,Hox4,Hox5,Hsf1-2-4,Irf-b,Isx,Klf15,Klf3/8/12,Klf5-like,Klf6-7-like,large-Maf,Lhx3/4,Lmx-b,Macho-1,Max,Meis,Meox,Mitf,Mnx,Msx,NFkb,Nk-1,Nk-3,Nkx3,Noto,Otp,Otx,Pax2-5-8-a,Pax3-7-like,Pax6,Pou4,Prop,Rax,Rel,Six3/6,small-Maf,Snail,SoxB1,SoxB2,SoxC,SoxF,Tbox-a,Tbox-b,Tbx15/18/22,Tbx2/3,Tcf3-4-12,Tlx,Uncx-b,Usf,YY1-2