61dc7885a5f1001e2bc189501379088f2b53379d galt Mon Feb 23 15:42:36 2026 -0800 fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146 diff --git src/utils/wigToBigWig/tests/makefile src/utils/wigToBigWig/tests/makefile index e074a41286c..1dff5b64c5a 100644 --- src/utils/wigToBigWig/tests/makefile +++ src/utils/wigToBigWig/tests/makefile @@ -43,31 +43,31 @@ bigWigSummary tmp/testBedGraph.bigWig chr5 131308806 132230652 1 > output/tbg1.sum bigWigSummary tmp/testBedGraph.bigWig chr5 131308806 132230652 10 > output/tbg10.sum bigWigSummary tmp/testBedGraph.bigWig chr5 131308806 132230652 100 > output/tbg100.sum bigWigSummary tmp/testBedGraph.bigWig chr5 131308806 132230652 1000 > output/tbg1000.sum bigWigSummary tmp/testBedGraph.bigWig chr5 131308806 132230652 10000 > output/tbg10000.sum # Do the diff diff output expected ${bigWigToWig} tmp/testFixed.bigWig output/testFixed.wig ${bigWigToWig} tmp/testVar.bigWig output/testVar.wig ${bigWigToWig} tmp/testBedGraph.bigWig output/testBedGraph.wig # note that the text dumps have many small differences that make # it difficult to simply compare input with output, things like - # rounding of floating differneces, one has comments the other lacks, + # rounding of floating differences, one has comments the other lacks, # having rows in different order by chromsome name. # re-generate big wigs from dumped text ${A} output/testFixed.wig input/test.sizes tmp/testFixed.bigWig2 ${A} output/testVar.wig input/test.sizes tmp/testVar.bigWig2 ${A} output/testBedGraph.wig input/test.sizes tmp/testBedGraph.bigWig2 diff tmp/testFixed.bigWig tmp/testFixed.bigWig2 diff tmp/testVar.bigWig tmp/testVar.bigWig2 diff tmp/testBedGraph.bigWig tmp/testBedGraph.bigWig2 # clean up temporary directories rm -r output tmp test2: outputDir mkdir -p tmp output