656046f15be10af43184064cb5d35522fe2e6554 gperez2 Wed Feb 25 09:04:35 2026 -0800 Updating the acknowledgement to Heng Li's group, refs #36293 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 5ad8fa45826..d1dd64cdf92 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -770,31 +770,31 @@ high accuracy. Easy regions are derived for variant filtration agnostic to individual samples. They are genomic intervals where general variant callers achieve high accuracy without sophisticated filtering.</p> <p class="text-center"> <img src="../../images/newsArchImages/panmask.png" alt="Panmask Easy 151b Regions track for the BRCA1 exon 19" width='75%'></p> <p> The pm151 regions are used to filter spurious variant calls in centromeres, long repeats, and other genomic regions where short-read mapping is often problematic. They cover 88.2% of hg38, 92.2% of coding regions, and 96.3% of ClinVar pathogenic variants. The track can be used to filter variant calls for clinical or research human samples. It shows regions that are easy to sequence, rather than those that are problematic. The data was derived from the HPRC assemblies, and this track presents the 151b-easy panmask set.</p> <p> We would like to thank the -<a href="https://hlilab.github.io/" target="_blank">HLi lab</a> +<a href="https://hlilab.github.io/" target="_blank">Heng Li's group</a> at Harvard Medical School for making this data available. We would also like to thank Max Haeussler and Gerardo Perez for their efforts on this release.</p> <a name="092425"></a> <h2>Sep. 24, 2025 CoLoRSdb small and structure variants for hg38 and hs1</h2> <p> We are excited to announce the release of the CoLoRSdb Small and Structural Variant tracks for the human assemblies <a href="/cgi-bin/hgTrackUi?db=hg38&g=longReadVariants&position=default" target="_blank">GRCh38/hg38</a> and <a href="/cgi-bin/hgTrackUi?db=hs1&g=hub_3671779_longReadVariants&position=default" target="_blank">CHM13/hs1</a>. These tracks provide a comprehensive catalog of genetic variation discovered through long-read whole genome sequencing, contributed by the international <a href="https://colorsdb.org" target="_blank">Consortium of Long Read Sequencing (CoLoRS)</a>. The small variant tracks (DeepVariant + GLnexus) contain single nucleotide polymorphisms (SNPs) and short indels, while the structural variant tracks (pbsv + Jasmine) display larger events including