65e058417a3426cf2ee0100b1e47e3397c19fee3 gperez2 Thu Feb 26 16:51:18 2026 -0800 Adding a note about the Table Browser not allowing Genome as a query region for the JASPAR track, refs #37168 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 1612fc84ec0..33d8b77a519 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -119,31 +119,34 @@ dm6, ce11, ci3, and sacCer3. These tracks represent genome-wide predicted binding sites for transcription factors with binding profiles in the JASPAR CORE collection. JASPAR is a regularly maintained open-access database that stores manually curated transcription factor (TF) binding profiles as position frequency matrices (PFMs).
The JASPAR 2026 update expanded the JASPAR CORE collection by 12% (306 added or upgraded profiles), culminating in a set of 2,633 non-redundant TF binding profiles. Genome sequences were scanned with JASPAR 2026 CORE TF binding profiles for each taxon independently using PWMScan. For more information, see the track description page. +target="_blank">track description page. Note: The JASPAR files contain billions of +items. Because of the data size, the Table Browser does not allow "Genome" as a query +region for this track, but it does support regional queries, which may time out over large regions. +See the Data Access section of the track description page for alternative ways to query this data.
The JASPAR database is a joint effort among several labs (please see the latest JASPAR paper). Binding site predictions and UCSC tracks were computed by the CBGR team at NCMBM using code developed at the Wasserman Lab. We would like to thank Luis Nassar and Gerardo Perez for their efforts on this release.
We are pleased to announce the release of the Phased Variants container track for hg38/GRCh38