65e058417a3426cf2ee0100b1e47e3397c19fee3 gperez2 Thu Feb 26 16:51:18 2026 -0800 Adding a note about the Table Browser not allowing Genome as a query region for the JASPAR track, refs #37168 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 1612fc84ec0..33d8b77a519 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -119,31 +119,34 @@ <a href="/cgi-bin/hgTrackUi?db=dm6&position=default&g=jaspar" target="_blank">dm6</a>, <a href="/cgi-bin/hgTrackUi?db=ce11&position=default&g=jaspar" target="_blank">ce11</a>, <a href="/cgi-bin/hgTrackUi?db=ci3&position=default&g=jaspar" target="_blank">ci3</a>, and <a href="/cgi-bin/hgTrackUi?db=sacCer3&position=default&g=jaspar" target="_blank">sacCer3</a>. These tracks represent genome-wide predicted binding sites for transcription factors with binding profiles in the <a href="https://jaspar.elixir.no/about/" target="_blank">JASPAR CORE collection</a>. JASPAR is a regularly maintained open-access database that stores manually curated transcription factor (TF) binding profiles as position frequency matrices (PFMs). </p> <p> The JASPAR 2026 update expanded the JASPAR CORE collection by 12% (306 added or upgraded profiles), culminating in a set of 2,633 non-redundant TF binding profiles. Genome sequences were scanned with JASPAR 2026 CORE TF binding profiles for each taxon independently using PWMScan. For more information, see the <a href="/cgi-bin/hgTrackUi?db=hg38&g=jaspar#TRACK_HTML" -target="_blank">track description page</a>. +target="_blank">track description page</a>. <b>Note</b>: The JASPAR files contain billions of +items. Because of the data size, the Table Browser does not allow "Genome" as a query +region for this track, but it does support regional queries, which may time out over large regions. +See the Data Access section of the track description page for alternative ways to query this data. </p> <p> The JASPAR database is a joint effort among several labs (please see the latest <a href="https://doi.org/10.1093/nar/gkaf1209" target="_blank">JASPAR paper</a>). Binding site predictions and UCSC tracks were computed by the <a href="https://mathelierlab.com/" target="_blank">CBGR team</a> at NCMBM using code developed at the Wasserman Lab. We would like to thank Luis Nassar and Gerardo Perez for their efforts on this release. </p> <a name="020926"></a> <h2>Feb. 09, 2026 Phased variants track for human (hg38 and hg19)</h2> <p> We are pleased to announce the release of the Phased Variants container track for <a href="/cgi-bin/hgTrackUi?db=hg38&position=default&g=phasedVars">hg38/GRCh38</a>