f1900dde9063ea0a4887c3f2d96fd8c29c9a1d6a jnavarr5 Tue Feb 24 15:49:58 2026 -0800 Adding information about Hub Space to the NAR help documentation. Changing relative links to CGIs to absolute when possible. Adding a missing

tag on the track hub help page, and adding information about hub space, refs #36893 diff --git src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html index d1959956fc9..7143f37fd71 100755 --- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html +++ src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html @@ -1249,32 +1249,34 @@ you will first need to create a single-column file that lists each non-UCSC setting and then use the "-extra=" option to specify this file when running hubCheck. For example, if you knew that a setting called "ensemblAssemblyName" was supported for use in track hubs by Ensembl, you could create a single line file that included the setting "ensemblAssemblyName". Then, when you want to check a hub that includes these extra trackDb settings, you would then specify this extra settings file on the command line:

$ hubCheck  -checkSettings -extra=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubCheckUnsupportedSettings/myExtraSettings.txt http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubCheckUnsupportedSettings/hub.txt
 

(Note: The settings listed here in the "extra" file are just examples and do not represent real trackDb variables for hubs at Ensembl.)

Where to host your data?

+

As stated in What Are Track Hubs?, track hubs files must be located in web-accessible locations that support byte-range requests. Four options for hosting include: +

Your Institution: Many universities provide a location for researchers to place shareable data on the web and contacting your institution's system administrators will help discover a location to store your data. For example, if you work at the NIH, there is an internal data sharing NIH network site. Sometimes institution firewall rules can change, and you may need to inform your system administrators to add browser IP addresses as exceptions, listed @@ -1313,30 +1315,35 @@ typically do work. As of 2020, they cost around 2-3 US cents/GB/month to store the hub data and 12-18 US cents per GB transferred, when the hub is used. For optimal performance, select a San Francisco / San Jose data center for the main UCSC site genome.ucsc.edu, a Frankfurt/Germany data center for genome-euro.ucsc.edu and a Tokyo data center for genome-asia.ucsc.edu. You may also want to review this discussion about issues with distributed storage servers. These services are external to UCSC and may change.

Free webspace: If you do not want to pay for web space, and your institution does not provide a data location supporting byte-range requests, we know of at least the following sites where you can host research data and configuration files for free: