a7d3d4f35aebfbbc6d974796fb107cd3e64c1470 brianlee Wed Mar 25 11:34:26 2026 -0700 Standardizing end Q2 to June 30th rather than July 1st 07-01 -> 06-30 diff --git src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html index d843671ca70..c221ecc38e0 100755 --- src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html +++ src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html @@ -62,38 +62,38 @@ Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH C 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_LM_8, 2026-03-31, 0d Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH D 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_NO_8, 2026-10-01, 0d Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH E 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_P_8, 2026-12-31, 0d Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH F 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_Q_8, 2027-03-31, 0d Submit L0-L1 from BATCH B, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_LM_111213, 2026-03-31, 0d Submit L0-L1 from BATCH C, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_NO_111213, 2026-10-01, 0d Submit L0-L1 from BATCH D, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_P_111213, 2026-12-31, 0d Submit L0-L1 from BATCH E-G, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_Q_111213, 2027-03-31, 0d Complete villages - submit L0-L1 to DRACC : crit, milestone, ADGC1_JK_14, 2025-09-30, 0d Village Analysis - submit L0-L1 to DRACC : crit, milestone, ADGC1_LM_14, 2026-03-31, 0d Calcium Imaging Capstone Analysis 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_K_15, 2025-09-30, 0d Calcium Imaging analysis excitatory/inhibitory neurons - Capstone Analysis 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_M_15, 2026-03-31, 0d Calcium Imaging Experiments and analysis of future batches 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds (Submit L0-L4 to DRACC) : crit, milestone, ADGC1_NOPQ_15, 2027-03-31, 0d section AIM 3 - Perform codex Capstone Lines (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) : crit, milestone, ADGC1_J_161718, 2025-07-01, 0d + Perform codex Capstone Lines (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) : crit, milestone, ADGC1_J_161718, 2025-06-30, 0d Spatial Proteomics Analysis Capstone Lines : crit, milestone, ADGC1_K_161718, 2025-09-30, 0d Perform codex BATCH B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) : crit, milestone, ADGC1_L_161718, 2025-12-31, 0d Spatial Proteomics Analysis BATCH B : crit, milestone, ADGC1_M_161718, 2026-03-31, 0d Perform codex BATCH C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) : crit, milestone, ADGC1_N_161718, 2027-03-31, 0d Spatial Proteomics Analysis BATCH C : crit, milestone, ADGC1_O_161718, 2027-03-31, 0d Perform codex and analysis for future batches : crit, milestone, ADGC1_Q_161718, 2027-03-31, 0d - Organoid snRNAseq analysis for Capstone Genes : crit, milestone, ADGC1_J_1920, 2025-07-01, 0d + Organoid snRNAseq analysis for Capstone Genes : crit, milestone, ADGC1_J_1920, 2025-06-30, 0d Perform snRNAseq for BATCH B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format) : crit, milestone, ADGC1_K_1920, 2025-09-30, 0d Organoid snRNAseq analysis for BATCH B : crit, milestone, ADGC1_L_1920, 2025-12-31, 0d Perform snRNAseq for BATCH C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format) : crit, milestone, ADGC1_M_1920, 2026-03-31, 0d Organoid snRNAseq analysis C : crit, milestone, ADGC1_N_1920, 2027-03-31, 0d Perform Integrative analysis across first 30 genes and across experimental modalities (Spatial and snRNAseq). Submit L3-L4 level data by this time at the latest : crit, milestone, ADGC1_O_1920, 2027-03-31, 0d Perform snRNAseq for future batches : crit, milestone, ADGC1_P_1920, 2026-12-31, 0d Organoid snRNAseq Analysis for future batches : crit, milestone, ADGC1_Q_1920, 2027-03-31, 0d
gantt
dateFormat YYYY-MM-DD
@@ -341,107 +341,107 @@
section Grant Year
Start Grant Year 3 :milestone, m1, 2025-03-31, 0d
Start Grant Year 4 :milestone, m1, 2026-03-31, 0d
Start Grant Year 5 :milestone, m1, 2027-03-31, 0d
section WUSTL Reporting Year
End WUSTL Reporting Year 1 :milestone, year1_wustl, 2025-12-31, 0d
End WUSTL Reporting Year 2 :milestone, m1, 2026-12-31, 0d
click year1_wustl href "https://docs.google.com/spreadsheets/d/1ae4bX4Ful2AWlqzeH_JOo4jFssmEsojd/edit?gid=1888128068#gid=1888128068&range=C2:E27"
section Aim 1
L0, L1 Data from last quarter submitted, and 3 more lines collected : crit, milestone, ADGC7_E_12, 2025-12-31, 0d
L0, L1 Data from last quarter submitted, and 4 more lines collected : crit, milestone, ADGC7_F_12, 2026-03-31, 0d
L2, L3 from prior L0,L1 data submitted : crit, milestone, ADGC7_F_13, 2026-03-31, 0d
- L0, L1 Data from lines 1-2 submitted : crit, milestone, ADGC7_Y2_C_12, 2026-07-01, 0d
+ L0, L1 Data from lines 1-2 submitted : crit, milestone, ADGC7_Y2_C_12, 2026-06-30, 0d
L2, L3 from lines 1-2 submitted : crit, milestone, ADGC7_Y2_D_12, 2026-09-30, 0d
L0, L1 Data from lines 3-5 submitted : crit, milestone, ADGC7_Y2_D_13, 2026-09-30, 0d
L2, L3 from lines 3-5 submitted : crit, milestone, ADGC7_Y2_E_13, 2026-12-31, 0d
L0, L1 Data from lines 6-10 submitted : crit, milestone, ADGC7_Y2_E_14, 2026-12-31, 0d
%% snRNAseq collected for lines 15-30 and data submitted one quarter post collection, L2 and L3 data submitted 2 quarters post collection : crit, milestone, ADGC7_Y2_F_12, 2027-12-31, 0d
%% L0, L1 Data from lines 11-14 submitted : crit, milestone, ADGC7_Y2_F_13, 2027-12-31, 0d
%% L2, L3 from lines 6-10 submitted : crit, milestone, ADGC7_Y2_F_14, 2027-12-31, 0d
section Aim 2
- Home Cage Behavior L0-L1 Data to DRACC for lines 1-2 : crit, milestone, ADGC7_C_17, 2025-07-01, 0d
+ Home Cage Behavior L0-L1 Data to DRACC for lines 1-2 : crit, milestone, ADGC7_C_17, 2025-06-30, 0d
Home Cage Behavior L3 Data to DRACC for lines 1-2 : crit, milestone, ADGC7_D_18, 2025-09-30, 0d
Home Cage Behavior L4 Data to DRACC for lines 1-2 : crit, milestone, ADGC7_E_19, 2025-12-31, 0d
Home Cage Behavior L0-L1 Data to DRACC for line 3-4 : crit, milestone, ADGC7_D_17, 2025-09-30, 0d
Home Cage Behavior L3 Data to DRACC for lines 3-4 : crit, milestone, ADGC7_E_18, 2025-12-31, 0d
%% Home Cage Behavior L4 Data to DRACC for lines 3-4 : crit, milestone, ADGC7_F_19, 2026-03-31, 0d
Home Cage Behavior L4 Data to DRACC for lines 3-4: crit, milestone, ADGC7_Y2_B_19, 2026-03-31, 0d
Home Cage Behavior L0-L1 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_E_17, 2025-12-31, 0d
%% Home Cage Behavior L3 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_F_18, 2026-03-31, 0d
Home Cage Behavior L3 Data to DRACC for lines 5-7: crit, milestone, ADGC7_Y2_B_18, 2026-03-31, 0d
- Home Cage Behavior L4 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_Y2_C_19, 2026-07-01, 0d
+ Home Cage Behavior L4 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_Y2_C_19, 2026-06-30, 0d
Home Cage Behavior L0-L1 Data to DRACC for lines 8-12: crit, milestone, ADGC7_Y2_B_17, 2026-03-31,
- Home Cage Behavior L3 Data to DRACC for line 8-12 : crit, milestone, ADGC7_Y2_C_18, 2026-07-01, 0d
+ Home Cage Behavior L3 Data to DRACC for line 8-12 : crit, milestone, ADGC7_Y2_C_18, 2026-06-30, 0d
Home Cage Behavior L4 Data to DRACC for lines 8-12 : crit, milestone, ADGC7_Y2_D_19, 2026-09-30, 0d
- Home Cage Behavior L0-L1 Data to DRACC for lines 13-16 : crit, milestone, ADGC7_Y2_C_17, 2026-07-01, 0d
+ Home Cage Behavior L0-L1 Data to DRACC for lines 13-16 : crit, milestone, ADGC7_Y2_C_17, 2026-06-30, 0d
Home Cage Behavior L3 Data to DRACC for line 13-16 : crit, milestone, ADGC7_Y2_D_18, 2026-09-30, 0d
Home Cage Behavior L4 Data to DRACC for lines 13-16 : crit, milestone, ADGC7_Y2_E_19, 2026-12-31, 0d
Home Cage Behavior L0-L1 Data to DRACC for lines 17-22 : crit, milestone, ADGC7_Y2_D_17, 2026-09-30, 0d
Home Cage Behavior L3 Data to DRACC for line 17-22 : crit, milestone, ADGC7_Y2_E_18, 2026-12-31, 0d
%% Home Cage Behavior L4 Data to DRACC for lines 17-22 : crit, milestone, ADGC7_Y2_F_19, 2027-12-31, 0d
Home Cage Behavior L0-L1 Data to DRACC for lines 23-27 : crit, milestone, ADGC7_Y2_E_17, 2026-12-31, 0d
%% Home Cage Behavior L3 Data to DRACC for line 23-27 : crit, milestone, ADGC7_Y2_F_18, 2027-12-31, 0d
%% Home Cage Behavior L0-L1 data to DRACC for lines 28-32 : crit, milestone, ADGC7_Y2_F_17, 2027-12-31, 0d
- IB & SI L0 Data to DRACC for lines 1-2 : crit, milestone, ADGC7_C_20, 2025-07-01, 0d
+ IB & SI L0 Data to DRACC for lines 1-2 : crit, milestone, ADGC7_C_20, 2025-06-30, 0d
IB & SI L1 & L3 Data to DRACC for lines 1-2 : crit, milestone, ADGC7_D_20, 2025-09-30, 0d
IB & SI L4 Data to DRACC for lines 1-2 : crit, milestone, ADGC7_E_20, 2025-12-31, 0d
IB & SI L0 Data to DRACC for lines 3-4 : crit, milestone, ADGC7_D_21, 2025-09-30, 0d
IB & SI L1 & L3 Data to DRACC for line 3-4 : crit, milestone, ADGC7_E_21, 2025-12-31, 0d
%% IB & SI L4 Data to DRACC for lines 3-4 : crit, milestone, ADGC7_F_21, 2026-03-31, 0d
IB & SI L4 Data to DRACC for lines 3-4 : crit, milestone, ADGC7_Y2_B_20, 2026-03-31, 0d
IB & SI L0 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_E_22, 2025-12-31, 0d
%% IB & SI L1 & L3 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_F_22, 2026-03-31, 0d
IB & SI L1 & L3 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_Y2_B_21, 2026-03-31, 0d
- IB & SI L4 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_Y2_C_20, 2026-07-01, 0d
+ IB & SI L4 Data to DRACC for lines 5-7 : crit, milestone, ADGC7_Y2_C_20, 2026-06-30, 0d
IB & SI L0 Data to DRACC for lines 8-12 : crit, milestone, ADGC7_Y2_B_22, 2026-03-31, 0d
- IB & SI L1 & L3 Data to DRACC for line 8-12 : crit, milestone, ADGC7_Y2_C_21, 2026-07-01, 0d
+ IB & SI L1 & L3 Data to DRACC for line 8-12 : crit, milestone, ADGC7_Y2_C_21, 2026-06-30, 0d
IB & SI L4 Data to DRACC for lines 8-12 : crit, milestone, ADGC7_Y2_D_20, 2026-09-30, 0d
- IB & SI L0 Data to DRACC for lines 13-16 : crit, milestone, ADGC7_Y2_C_22, 2026-07-01, 0d
+ IB & SI L0 Data to DRACC for lines 13-16 : crit, milestone, ADGC7_Y2_C_22, 2026-06-30, 0d
IB & SI L1 & L3 Data to DRACC for line 13-16 : crit, milestone, ADGC7_Y2_D_21, 2026-09-30, 0d
IB & SI L4 Data to DRACC for lines 13-16 : crit, milestone, ADGC7_Y2_E_20, 2026-12-31, 0d
IB & SI L0 Data to DRACC for lines 17-22 : crit, milestone, ADGC7_Y2_D_22, 2026-09-30, 0d
IB & SI L1 & L3 Data to DRACC for line 17-22 : crit, milestone, ADGC7_Y2_E_21, 2026-12-31, 0d
IB & SI L0 Data to DRACC for lines 23-27 : crit, milestone, ADGC7_Y2_E_22, 2026-12-31, 0d
%% IB & SI L4 Data to DRACC for lines 17-22 : crit, milestone, ADGC7_Y2_F_20, 2027-12-31, 0d
%% IB & SI L1 & L3 Data to DRACC for line 23-27 : crit, milestone, ADGC7_Y2_F_21, 2027-12-31, 0d
%% IB & SI L0 Data to DRACC for lines 28-32 : crit, milestone, ADGC7_Y2_F_22, 2027-12-31, 0d
section Aim 3
%% Imaging L0, L1 data collected for 3 lines : crit, milestone, ADGC7_D_27, 2025-09-30, 0d
L0, L1 Data from last quarter submitted, and 4 more lines collected : crit, milestone, ADGC7_E_27, 2025-12-31, 0d
%% L0, L1 Data from last quarter submitted, and 4 more lines collected : crit, milestone, ADGC7_F_27, 2026-03-31, 0d
L2, L3 from prior L0,L1 data submitted : crit, milestone, ADGC7_F_28, 2026-03-31, 0d
L0, L1 Data from lines 1-3 submitted : crit, milestone, ADGC7_Y2_B_27, 2026-03-31, 0d
- L2, L3 from lines 1-3 submitted : crit, milestone, ADGC7_Y2_C_27, 2026-07-01, 0d
- L0, L1 Data from lines 4-6 submitted : crit, milestone, ADGC7_Y2_C_28, 2026-07-01, 0d
+ L2, L3 from lines 1-3 submitted : crit, milestone, ADGC7_Y2_C_27, 2026-06-30, 0d
+ L0, L1 Data from lines 4-6 submitted : crit, milestone, ADGC7_Y2_C_28, 2026-06-30, 0d
L2, L3 from lines 4-6 submitted : crit, milestone, ADGC7_Y2_D_28, 2026-09-30, 0d
L0, L1 Data from lines 7-11 submitted : crit, milestone, ADGC7_Y2_D_29, 2026-09-30, 0d
L2, L3 from lines 7-11 submitted : crit, milestone, ADGC7_Y2_E_29, 2026-12-31, 0d
L0, L1 Data from lines 11-15 submitted : crit, milestone, ADGC7_Y2_E_30, 2026-12-31, 0d
%% Spatial collected for lines 20-40 and data submitted one quarter post collection, L2 and L3 data submitted 2 quarters post collection : crit, milestone, ADGC7_Y2_F_28, 2027-12-31, 0d
%% L0, L1 Data from lines 16-20 submitted : crit, milestone, ADGC7_Y2_F_29, 2027-12-31, 0d
%% L2, L3 from lines 11-15 submitted : crit, milestone, ADGC7_Y2_F_30, 2027-12-31, 0d