41c485c8e4bda02a3de334444479d9ae92140c7c lrnassar Fri Mar 27 16:13:20 2026 -0700 Restore original alt text for images that already had alt attributes. The initial alt text commit incorrectly replaced 44 existing human-written descriptions with AI-generated generic text across 12 files. Feedback from CR. refs #37289 diff --git src/hg/htdocs/inc/hgCollectionHelpInclude.html src/hg/htdocs/inc/hgCollectionHelpInclude.html index e36078cb5a7..be6eb623f2f 100755 --- src/hg/htdocs/inc/hgCollectionHelpInclude.html +++ src/hg/htdocs/inc/hgCollectionHelpInclude.html @@ -117,31 +117,32 @@
  • Add & remove tracks
  • Step 3: Browser viewing options

    When viewing collections within the browser, the following viewing options are available:

    Tip: Displaying collection names in the browser:

    - Track Collection Builder showing mouseover tooltip on a collection item

    + hgCollection Mouse-over in browser window.jpg


    Once a collection has been created and tracks have been added to it, click (upper right) to view the collection in the browser window. In the browser, mouse-over the gray vertical buttons at the left window frame to see the name of each collection.



    @@ -192,61 +194,64 @@
  • Track Color:
  • Track color for all subtracks in a collection can be set by double-clicking the collection folder in the right window of the Track Collection Builder, which will display a pop-up dialog box. In the pop-up, a color can be set for the subtracks in the collection. Color will be applied as a gradient to subtracks in the collection (e.g., if red is selected, the subtrack graphs will appear in varied shades of red within the browser window).

    To revert back to the original track color, change the color picker to '#000000'. To change the track color to black rather than any non-black original color, set the color picker to any shade of black besides '#000000', such as '#000001'. For example, if a track's original color is green, you can change it to red with the color picker. To change this track back to the original color (green), set the color picker to '#000000'. If you instead want to change that track to black, select any shade of black in the color picker, such as '#000001'.

    - Track Collection Builder with color editing icon on a folder

    + hgCollection double click folder icon to edit color

    - Color picker dialog for setting track collection display color

    + hgCollection name, description and color pop-up editor

  • Merge methods (aggregate/overlay graphing view options):
  • None
    Default setting; no overlay/merge is applied. Subtracks appear as individual tracks within the collection/composite.
    Transparent
    Subtrack graphs are merged together with transparent overlay views.
    Solid
    Subtrack graphs are merged together with solid overlay views.
    Stacked
    Subtrack graphs are layered horizontally with solid overlay views for each subtrack.
    Add
    Subtrack graphs are layered horizontally and merged into one solid overlay color; the silhouette of 'stacked.' For this 'add' view, there is also the option to configure how missing data are treated (see section below).
    Subtract
    The first (top) subtrack is subtracted from the sum of the others. Note: Re-order collection subtracks in the 'Collected Tracks' pane to change which subtract is at the top. For this 'subtract' view, there is also the option to configure how missing data are treated (see section below).

    - Merge method dropdown options for combining tracks in a collection

    + hgCollection drop-down options for Merge Method


    Tracks in collections can be displayed with multiWig aggregate/overlay "merge" methods (stacked, transparent, etc.) as well as new add & subtract options.