41c485c8e4bda02a3de334444479d9ae92140c7c lrnassar Fri Mar 27 16:13:20 2026 -0700 Restore original alt text for images that already had alt attributes. The initial alt text commit incorrectly replaced 44 existing human-written descriptions with AI-generated generic text across 12 files. Feedback from CR. refs #37289 diff --git src/hg/htdocs/inc/hgCollectionHelpInclude.html src/hg/htdocs/inc/hgCollectionHelpInclude.html index e36078cb5a7..be6eb623f2f 100755 --- src/hg/htdocs/inc/hgCollectionHelpInclude.html +++ src/hg/htdocs/inc/hgCollectionHelpInclude.html @@ -117,31 +117,32 @@
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When viewing collections within the browser, the following viewing options are available:
Drag and drop collections (composite tracks) within the browser to rearrange the order in which they appear in the browser.
To sort by magnitude, right-click the collection in the browser window and select . For the given region visible in the browser window, tracks within the collection will sort in order of magnitude, with the highest in magnitude at the top of the subtracks in the collection where magnitude reflects the total number of pixels set when drawing each track.
Tip: Displaying collection names in the browser:
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Once a collection has been created and tracks have been added to it, click (upper right) to view the collection in the browser window. In the browser, mouse-over the gray vertical buttons at the left window frame to see the name of each collection.
Track color for all subtracks in a collection can be set by double-clicking the collection folder in the right window of the Track Collection Builder, which will display a pop-up dialog box. In the pop-up, a color can be set for the subtracks in the collection. Color will be applied as a gradient to subtracks in the collection (e.g., if red is selected, the subtrack graphs will appear in varied shades of red within the browser window).
To revert back to the original track color, change the color picker to '#000000'. To change the track color to black rather than any non-black original color, set the color picker to any shade of black besides '#000000', such as '#000001'. For example, if a track's original color is green, you can change it to red with the color picker. To change this track back to the original color (green), set the color picker to '#000000'. If you instead want to change that track to black, select any shade of black in the color picker, such as '#000001'.
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Tracks in collections can be displayed with multiWig aggregate/overlay "merge" methods (stacked, transparent, etc.) as well as new add & subtract options.