41c485c8e4bda02a3de334444479d9ae92140c7c lrnassar Fri Mar 27 16:13:20 2026 -0700 Restore original alt text for images that already had alt attributes. The initial alt text commit incorrectly replaced 44 existing human-written descriptions with AI-generated generic text across 12 files. Feedback from CR. refs #37289 diff --git src/hg/htdocs/ENCODE/usageResources.html src/hg/htdocs/ENCODE/usageResources.html index 98584f34667..4bb9410cfa1 100755 --- src/hg/htdocs/ENCODE/usageResources.html +++ src/hg/htdocs/ENCODE/usageResources.html @@ -1,71 +1,72 @@ <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd"> <html> <head> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> <meta name="description" content="ENCODE Project at UCSC - "> <meta name="keywords" content="ENCODE, project, ENCODE project, genome, genome browser, human genome, Blat, UCSC, bioinformatics, gene prediction, SNP, EST, mRNA, NHGRI, NISC"> <title>ENCODE Project at UCSC: Education and Outreach</title> <link rel="stylesheet" href="/style/HGStyle.css" type="text/css"> <link rel="stylesheet" href="/style/encodeProject.css" type="text/css"> </head> <body> <!--#include virtual="/inc/encodeProject.topbar.html"--> <div class="encodeHeader"> - <a href="/ENCODE/index.html"><img alt="UCSC Genome Browser logo" src="/images/gbLogoOnly.png" title="ENCODE Data at NHGRI"></a> + <a href="/ENCODE/index.html"><img src="/images/gbLogoOnly.png" + alt="ENCODE Data at UCSC" title="ENCODE Data at NHGRI"></a> <span class="txt">ENCODE Education and Outreach</span> </div> <div class="wrapper"> <div class="bar"><h4 class="title">Resources</h4></div> <div class="content"> <P> <H3>Tutorials and Reference Card</H3> <UL> <li><a href="http://www.genome.gov/27553900" target="_blank">NHGRI ENCODE Tutorials</a></li> <LI><A TARGET=_blank HREF="http://www.openhelix.com/cgi/qrcOrder.cgi/"> ENCODE Quick Reference Card</A> (free <a target="_blank" href="/ENCODE/usageResources/ENCODE_QuickReferenceCard.pdf">pdf</a> courtesy of OpenHelix).</LI> <LI><A TARGET=_blank HREF="http://www.sanger.ac.uk/resources/talksandtraining/opendoor/singapore.html"> Ensembl/UCSC/WTSI ENCODE Workshop at HGM/IGC2013</A>, <em>"Working with ENCODE Data"</em>.</LI> </UL> <H3>Publications</H3> <UL> <LI>ENCODE Project Consortium. <A HREF="https://www.ncbi.nlm.nih.gov/pubmed/21526222" TARGET=_blank>A User's Guide to the Encyclopedia of DNA Elements (ENCODE)</A>. <em>PLoS Biol</em>. 2011 Apr;9(4):e1001046. Epub 2011 Apr 19. </LI> <LI>The ENCODE Data Coordination Center, UC Santa Cruz Genome Bioinformatics</br> <A HREF="http://nar.oxfordjournals.org/cgi/content/full/41/D1/D56" TARGET=_blank>ENCODE Data in the UCSC Genome Browser: year 5 update</A>. <em>Nucleic Acids Res</em>. 2013 Jan;41(Database issue):D56-63. Epub 2012 Nov 27.<br> <A HREF="http://nar.oxfordjournals.org/cgi/content/full/40/D1/D912" TARGET=_blank>ENCODE whole-genome data in the UCSC Genome Browser: update 2012</A>. <em>Nucleic Acids Res</em>. 2012 Jan;40(Database issue):D912-7. Epub 2011 Nov 9. <br> <A HREF="http://nar.oxfordjournals.org/cgi/content/full/39/suppl_1/D871" TARGET=_blank>ENCODE whole-genome data in the UCSC Genome Browser (2011 update)</A>. <em>Nucleic Acids Res</em>. 2011 Jan;39(Database issue):D871-5. Epub 2010 Oct 30. <br> <A HREF="http://nar.oxfordjournals.org/cgi/content/full/38/suppl_1/D620" TARGET=_blank>ENCODE whole-genome data in the UCSC Genome Browser</A>. <em>Nucleic Acids Res</em>. 2010 Jan;38(Database issue):D620-5. Epub 2009 Nov 17. </LI> </UL> <H3>Other</H3> <UL> <LI><A HREF="/ENCODE/usageResources/ismbEncodeTechPresentation2011.pdf" TARGET=_blank>ENCODE Genome-Wide Data on the UCSC Genome Browser</A>. 'Tech talk' presentation at <em>ISMB/ECCB Conference</em>, July 2011.</LI> </UL> </p> </div><!--end content--> </div><!--end wrapper--> <p class="date">Updated 20 May 2013</p> </BODY> </HTML>