e76b0018bb4c574f92f691f1594e85cbf7a7b3f0 mspeir Tue Mar 24 08:31:10 2026 -0700 minor tweaks based on CR, refs #37250 diff --git docs/genomeBrowserGlossary.md docs/genomeBrowserGlossary.md index cf0abdc8fe1..daf1bfbfe5c 100644 --- docs/genomeBrowserGlossary.md +++ docs/genomeBrowserGlossary.md @@ -281,36 +281,36 @@ **Strand (+ / -)**: The orientation of a genomic feature relative to the reference sequence. The positive (+) strand reads 5' to 3' left to right; the negative (-) strand reads 3' to 5'. In gene tracks, chevrons (arrows) within intron lines indicate the direction of transcription. **Details Page**: The information page that opens when you click on an item in the browser graphic. Displays feature-specific data such as genomic coordinates, strand, score, and links to external databases. The content varies by track type. **[Multi-Region Mode](/goldenPath/help/multiRegionHelp.html)**: A display mode that shows non-contiguous genomic regions side by side. Options include exon-only view (hiding introns), gene-only view (hiding intergenic regions), and custom regions defined by a BED file. Also supports viewing alternate haplotype sequences in chromosomal context. Accessible from the View menu -or button next to position box. +or button next to the position box. **[Track Collection Builder](/cgi-bin/hgCollection)**: A tool for combining multiple wiggle-type tracks (bigWig, bedGraph) from native browser data, custom tracks, or track hubs into a single configurable composite. Supports -overlay methods including transparent, stacked, add, and subtract. Accessible +overlay methods, including transparent, stacked, add, and subtract. Accessible from the My Data menu. **Filtering**: Track-level configuration that limits the displayed items to those matching specified criteria such as score thresholds, name patterns, or field values. Filter settings are available on many track settings pages and persist across sessions. Click the minibutton or "Configure" from the right-click menu to see available filter options for a specific track. ### Display Modes | Mode | Description | |------|-------------| | `hide` | Track is not displayed | | `dense` | All features collapsed into a single line | | `squish` | Features shown at reduced height |