5dbf9093ef09955761609bf2a591181b3d96a621 gperez2 Mon Mar 16 16:57:16 2026 -0700 Updating links to show track description page, #36826 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 33516507892..2540a710292 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -72,45 +72,45 @@ >Human Methylation Atlas Summary</a> and <a href="/cgi-bin/hgTrackUi?db=hg38&g=humanMethylationAtlasSignals&position=default" target="_blank">Signals</a> tracks for hg38 and hg19, available in the <a href="/cgi-bin/hgTrackUi?db=hg38&g=dnaMethylation&position=default" target="_blank" >DNA Methylation superTrack</a>. The Human Methylation Atlas tracks display genome-wide DNA methylation profiles from deep whole-genome bisulfite sequencing (WGBS) of 39 primary human cell types sorted from 205 healthy tissue samples. </p> <div class="text-center"> <a href="https://genome.ucsc.edu/s/QAtester/humanMethylationAtlas" target="_blank"> <img src="../images/newsArchImages/humanMethylationAtlas.png" alt="Example of cell-type specific unmethylated regions and methylation signals (hg38, chr2:3,233,601-3,284,760) for blood, neuronal, pancreatic, and thyroid cell types" width='60%'></a> </div> <p> -The <a href="/cgi-bin/hgTrackUi?db=hg38&g=humanMethylationAtlasSummary&position=default" +The <a href="/cgi-bin/hgTrackUi?db=hg38&g=humanMethylationAtlasSummary&position=default#TRACK_HTML" target="_blank">Human Methylation Atlas Summary track</a> consists of three subtracks: </p> <ul> <li><b>All Unmethylated Regions</b> - unmethylated genomic regions for each of the 39 cell types.</li> <li><b>Putative Enhancers from Unmethylated Regions</b> - putative enhancers derived from unmethylated regions for 32 of the 39 cell types. </li> <li><b>Top 250 Unmethylated Regions per Cell Type</b> - the top 250 most specifically unmethylated regions in each of the 39 cell types. </li> </ul> <p> -The <a href="/cgi-bin/hgTrackUi?db=hg38&g=humanMethylationAtlasSignals&position=default" +The <a href="/cgi-bin/hgTrackUi?db=hg38&g=humanMethylationAtlasSignals&position=default#TRACK_HTML" target="_blank">Human Methylation Atlas Signals track</a> displays per-cell-type methylation beta values (0-1 scale) across the genome, with <b>merged</b> tracks combining all replicates per cell type and <b>replicate</b> tracks for each individual sample. </p> <p> We would like to thank the Dor, Kaplan, and Glaser laboratories at the Hebrew University of Jerusalem and collaborating institutions for generating and providing these data. </p> <a name="031326"></a> <h2>Mar. 13, 2026 gnomAD v4 Exome and v3 Genome coverage tracks for hg38</h2> <p> We are pleased to announce the release of two new coverage tracks from the <a href="https://gnomad.broadinstitute.org/" target="_blank">Genome Aggregation Database