b1bf46da53916a9741f163ea439ac459b3957b0a
hiram
  Mon Mar 16 14:39:59 2026 -0700
enhanced command to allow 2bit inputs - code by claude assistance - no redmine

diff --git src/utils/faCount/tests/expected/mixed.txt src/utils/faCount/tests/expected/mixed.txt
new file mode 100644
index 00000000000..91d2a102327
--- /dev/null
+++ src/utils/faCount/tests/expected/mixed.txt
@@ -0,0 +1,10 @@
+#seq	len	A	C	G	T	N	cpg
+s1	83	16	22	20	20	5	3
+s1	83	16	22	20	20	5	3
+s2	137	31	37	34	35	0	8
+s2	137	31	37	34	35	0	8
+s1	83	16	22	20	20	5	3
+s2	137	31	37	34	35	0	8
+s1	83	16	22	20	20	5	3
+s2	137	31	37	34	35	0	8
+total	880	188	236	216	220	20	44