b1bf46da53916a9741f163ea439ac459b3957b0a
hiram
  Mon Mar 16 14:39:59 2026 -0700
enhanced command to allow 2bit inputs - code by claude assistance - no redmine

diff --git src/utils/faCount/tests/expected/mixedDinuc.txt src/utils/faCount/tests/expected/mixedDinuc.txt
new file mode 100644
index 00000000000..77c1cc5819e
--- /dev/null
+++ src/utils/faCount/tests/expected/mixedDinuc.txt
@@ -0,0 +1,10 @@
+#seq	len	A	C	G	T	N	cpg	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
+s1	83	16	22	20	20	5	3	3	5	6	1	3	7	3	7	5	3	3	8	3	6	5	4
+s1	83	16	22	20	20	5	3	3	5	6	1	3	7	3	7	5	3	3	8	3	6	5	4
+s2	137	31	37	34	35	0	8	9	8	10	4	6	12	8	11	9	8	6	11	7	9	9	9
+s2	137	31	37	34	35	0	8	9	8	10	4	6	12	8	11	9	8	6	11	7	9	9	9
+s1	83	16	22	20	20	5	3	3	5	6	1	3	7	3	7	5	3	3	8	3	6	5	4
+s2	137	31	37	34	35	0	8	9	8	10	4	6	12	8	11	9	8	6	11	7	9	9	9
+s1	83	16	22	20	20	5	3	3	5	6	1	3	7	3	7	5	3	3	8	3	6	5	4
+s2	137	31	37	34	35	0	8	9	8	10	4	6	12	8	11	9	8	6	11	7	9	9	9
+total	880	188	236	216	220	20	44	48	52	64	20	36	76	44	72	56	44	36	76	40	60	56	52