b1bf46da53916a9741f163ea439ac459b3957b0a
hiram
  Mon Mar 16 14:39:59 2026 -0700
enhanced command to allow 2bit inputs - code by claude assistance - no redmine

diff --git src/utils/faCount/tests/expected/mixedStrands.txt src/utils/faCount/tests/expected/mixedStrands.txt
new file mode 100644
index 00000000000..736c444b403
--- /dev/null
+++ src/utils/faCount/tests/expected/mixedStrands.txt
@@ -0,0 +1,10 @@
+#seq	len	A	C	G	T	N	cpg
+s1	166	36	42	42	36	10	6
+s1	166	36	42	42	36	10	6
+s2	274	66	71	71	66	0	16
+s2	274	66	71	71	66	0	16
+s1	166	36	42	42	36	10	6
+s2	274	66	71	71	66	0	16
+s1	166	36	42	42	36	10	6
+s2	274	66	71	71	66	0	16
+total	1760	408	452	452	408	40	88