Commits for jcasper

v496_preview to v496_preview2 (2026-03-16 to 2026-03-23) v496

d99ea622f4024a17ea2cb5dbb4a4d81fd14395c7 Mon Mar 16 10:05:34 2026 -0700

• Moving cartDump vis adjustments for faceted tracks into its own function, per request. refs #37090
  • src/hg/cartDump/cartDump.c - lines changed 98, context: html, text, full: html, text

ddb0492ea27cc63662c636f901fee2490f738bab Mon Mar 16 14:30:42 2026 -0700

• Adding some faceted composite trackDb settings to tagTypes.tab for validity checks on native tracks, refs #36320
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 5, context: html, text, full: html, text

66e8e1c2647f443f0e8371d44f40266b6ff20abd Tue Mar 17 14:26:40 2026 -0700

• Changing certificate renewal warnings to 14 days ahead instead of 30
  • src/utils/qa/checkHTTPS - lines changed 2, context: html, text, full: html, text

5ba2c58ea600a81b0f5f8bc38a5c43b1500d9099 Wed Mar 18 14:56:48 2026 -0700

• Adding psygene server to the certs check script, per Erich's request
  • src/utils/qa/checkHTTPS - lines changed 2, context: html, text, full: html, text

5e6748ef77c3ede258c0ae362b0a1e626e62555c Wed Mar 18 17:17:25 2026 -0700

• Adding link to the heatmap docs in the format FAQ, refs #36176
  • src/hg/htdocs/FAQ/FAQformat.html - lines changed 1, context: html, text, full: html, text

21805a85e551d9688edb34683f955c8a41710e80 Wed Mar 18 22:17:44 2026 -0700

• Added a #defined-out version of cgiDecode that's much faster for large cart variables. Came up once years ago but was never put into practice. refs #37262
  • src/inc/cheapcgi.h - lines changed 8, context: html, text, full: html, text
  • src/lib/cheapcgi.c - lines changed 68, context: html, text, full: html, text

3d91dda86ff75aa59b6095ae6bcab96d72f99656 Wed Mar 18 22:45:15 2026 -0700

• eatExcessDotDotInPath does unexpected things with inputs like ../../ and /a/./.. . Adding an alternate version until we can assess the impacts of changing. refs #36320, #37263
  • src/inc/filePath.h - lines changed 6, context: html, text, full: html, text
  • src/inc/portable.h - lines changed 9, context: html, text, full: html, text
  • src/lib/filePath.c - lines changed 25, context: html, text, full: html, text
  • src/lib/osunix.c - lines changed 89, context: html, text, full: html, text

806f2d5c05d95f32fe2b1aadd8a70fbd9d0488ad Wed Mar 18 22:49:28 2026 -0700

• hgFetch gains support for retrieving local files from whitelisted trackDb settings, but only for locally defined tracks. refs #36320
  • src/hg/hgFetch/hgFetch.c - lines changed 54, context: html, text, full: html, text

6fffb6bc625848c354f044f0f1faed45c84c8f7d Wed Mar 18 23:01:31 2026 -0700

• Removing unused variable, refs #36320
  • src/lib/osunix.c - lines changed 1, context: html, text, full: html, text

8094e7fe54b5d6725fc5c6a6fecb9efdde170967 Thu Mar 19 00:55:26 2026 -0700

• A few fixes in the ifdef'd alternate cgiDecode version; ensuring a length variable is appropriately set and used, refs #37262
  • src/lib/cheapcgi.c - lines changed 3, context: html, text, full: html, text

e30f8b3d5580f0be19ce22334dd97ccb497c49dc Thu Mar 19 11:40:59 2026 -0700

• Handle empty highlight cart variable appropriately (i.e. don't crash), refs #37268
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text

5a1806a2620b4ac94254776f6bd3cbf2388b9009 Sun Mar 22 01:11:19 2026 -0700

• Installing updated hg.conf files from UCSC servers
  • confs/asia.hg.conf - lines changed 2, context: html, text, full: html, text
  • confs/euro.hg.conf - lines changed 2, context: html, text, full: html, text
  • confs/hgwdev.hg.conf - lines changed 5, context: html, text, full: html, text
  • confs/rr.hg.conf - lines changed 2, context: html, text, full: html, text

d543bdd5f9407b7373c73a3cab930c389971287b Mon Mar 23 09:27:15 2026 -0700

• Ongoing faceted composite modifications - collapsible facets, chips for selected facets, moving the show-only-selected element. Also first pass at using a CGI to fetch the metadata file, refs #36320
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/style/facetedComposite.css - lines changed 119, context: html, text, full: html, text
  • src/hg/js/facetedComposite.js - lines changed 176, context: html, text, full: html, text