019256d07c6f791954ecb76e3e40a4da960098ef lrnassar Wed Mar 18 16:43:19 2026 -0700 Fixing small issues I noticed in commits, refs #37243 diff --git src/hg/htdocs/goldenPath/help/hgConvert.html src/hg/htdocs/goldenPath/help/hgConvert.html index 58d24052dcf..3a1fc2cef2e 100755 --- src/hg/htdocs/goldenPath/help/hgConvert.html +++ src/hg/htdocs/goldenPath/help/hgConvert.html @@ -1,16 +1,15 @@ -<!-- This file is included in hgVai's "Using the Variant Annotation Integrator" section. --> <!-- HREF paths are relative to cgi-bin, not goldenPath/help. --> <a name="overview"></a> <h3>Overview</h3> <p> An alignment between two DNA sequences maps every nucleotide in one sequence to a nucleotide in another sequence. By making and using <a href="https://pmc.ncbi.nlm.nih.gov/articles/PMC208784/" target="_blank">whole-genome alignments</a>, the UCSC Genome Browser always allowed users to "lift" genome annotations to another assembly (<a href="/cgi-bin/hgLiftOver" target="_blank">liftOver</a>), in bulk, one track at a time. <font color="#008000">QuickLift</font> is a tool that uses the same algorithm, but it maps (liftOver) annotations on demand, in real-time, for all visible tracks. Only the annotations in the currently visible region are lifted, so this is usually fast enough when browsing a genome. For example, <font color="#008000">QuickLift</font> can be used to map annotations from hg38 or hg19 to any of the hundreds of new human high-quality genomes in GenArk